Query= MSMg01no085_d02.b1 MSMg01no085_d02.b1 CHROMAT_FILE:
MSMg01no085_d02.b1 PHD_FILE: MSMg01no085_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:37 2005
(437 letters)
>mm_chr8_118074382_118075216
Length = 835
Score = 739 bits (382), Expect = 0.0
Identities = 421/434 (97%), Gaps = 2/434 (0%)
Strand = Plus / Plus
Query: 4 ggaattccagaacttttagtatggcatattttttttcccggactggccagtatattgatt 63
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 204 ggaattccagaacttttagtatgg-atattttttt-cccggactggccagtatattgatt 261
Query: 64 attttcctagaaacacacacagtggaaggcctgcaaattatctggcaatcaagtctctac 123
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atttttctagaaacacacatagtggaaggcctgcaaattatctggcaatcaagtctctac 321
Query: 124 aaggggagggtgaaactttttttgtatagtttaccacttttttggtgtaaatgattgcat 183
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 322 aaggggagggtgaaactttttttgtatagtttgccacttttttggagtaaatgattgcat 381
Query: 184 gagtccaaacactcagtgtgaagccacctggactacaagacagctgaagttttgacaatt 243
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 382 gagtccaaacactcagtgtgaagccacttggactacaagacagctgaagttttgacaact 441
Query: 244 ggctttttcaggcaggtgtacaccagttccagcttatttcaatgctggctccttctggct 303
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggctttttcaggcaggtgtacgccagttccagcttatttcaatgctggctccttctggct 501
Query: 304 ccctagaatcaactcttaattcatatagtgtgtcttgcattatgtacactgttgtgtttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 502 ccctagaatcaactcttaattcatatagtgtgtcttgcattatgtacactgttgtgtaat 561
Query: 364 atattatgttgttaaaagtctacatacatacttttaacacatactacatatttaataaat 423
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 562 atattatgttgttaaaagtctacatacatacttttaatacataatacatatttaataaat 621
Query: 424 aagacatagtttaa 437
||||||||||||||
Sbjct: 622 aagacatagtttaa 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 835
Length adjustment: 9
Effective length of query: 428
Effective length of database: 826
Effective search space: 353528
Effective search space used: 353528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no085_d02.g1 MSMg01no085_d02.g1 CHROMAT_FILE:
MSMg01no085_d02.g1 PHD_FILE: MSMg01no085_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:37 2005
(621 letters)
>mm_chr8_118135621_118136642
Length = 1022
Score = 1089 bits (563), Expect = 0.0
Identities = 607/625 (97%), Gaps = 8/625 (1%)
Strand = Plus / Minus
Query: 1 tttgattaggccacacatttgaccatgggcttcctggcgaccaaagtaaaaagggaagca 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 665 tttgattaggccacacatttgaccatgggcttcctggtgaccaaagtaaaaagggaagca 606
Query: 61 gaggcagtcatgtgattttccttgtacaagaagagcagacaaggcagttcctcttcaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gaggcagtcatgtgattttccttgtacaagaagagcagacaaggcagttcctcttcaggc 546
Query: 121 taagacagagaacgatgcatgatgggagcagagctggataatgcattcccagcatggatg 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 taagacaaagaacgatgcatgatgggagcagagctggataatgcattcccagcatggatg 486
Query: 181 gtatgacccagagaaggcagcagggccactcctgtcacaatagtgggggcacgtctcggg 240
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 485 gtatgacccagagaaggtagcagggccactcctgtcacaatagtgggggcacatctcggg 426
Query: 241 agagagggaacaaggatttccaggtggggattacattggattgggtcttcagtctttgag 300
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 425 agagagggaacaaggatttccagatggggattacattggattggatcttcagtctttgag 366
Query: 301 aagtttatttaccttaattttgcagtaaacactttttattatcaa----tttaaaaaaaa 356
|||||||||||| |||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 365 aagtttatttactttaattttgcagtaaacactttttattatcaattttttt---aaaaa 309
Query: 357 atgttcttagaaaatgttagctctttttaataaaatttgtagctcatctagattccagcg 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 308 atgttcttagaaaatgttagctctttttaataaaatttgtagctcatctagattccagtg 249
Query: 417 gctttctggctgtgtgatatatcaagggtttaatgagggaatttagctgcttagtgtagc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gctttctggctgtgtgatatatcaagggtttaatgagggaatttagctgcttagtgtagc 189
Query: 477 ttctggaacattgtagatactcaataaaaaaatcgttgagtgaatgcttggaatattaac 536
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 188 ttctggaacattgtagatactcaat-aaaaaatcgttgagtgaatgcttagaatattaac 130
Query: 537 aaggggcgggggataaaggacagactctacaaagtactgagggttcttcagtgaaacaca 596
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 129 aaggggcgggggataaaggacagactctacaaagtactgagcgttcttcagtgaaacaca 70
Query: 597 ttgtgataacctgagcatgtgctgg 621
|||||||||||||||||||||||||
Sbjct: 69 ttgtgataacctgagcatgtgctgg 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space: 618332
Effective search space used: 618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
