MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-085P03
Chromosome	8 (Build37)
Map Location	41,137,081 - 41,137,355
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Tusc3, LOC100038974, LOC632066, EG621335, LOC434304, Msr1, EG621431, LOC100039072, LOC666959, EG632166
Downstream gene	Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Tusc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80286 MGI:1933134
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100038974 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038974
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC632066 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:632066
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	EG621335 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:621335 MGI:3646754
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	LOC434304 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:434304
definition	note : copine VIII pseudogene pseudo : _no_value

name	Msr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20288 MGI:98257
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG621431 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:621431 MGI:3646883
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	LOC100039072 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039072
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins

name	LOC666959 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666959
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	EG632166 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:632166 MGI:3647792
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins pseudo : _no_value

name	Fgf20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80857 MGI:1891346
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2900075B16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78506 MGI:1925756
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs, 6 Proteins

name	Zdhhc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70546 MGI:1923452
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cnot7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18983 MGI:1298230
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vps37a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52348 MGI:1261835
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mtmr7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54384 MGI:1891693
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039179 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039179
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs

name	Adam24 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13526 MGI:105984
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667019 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667019
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins pseudo : _no_value

name	LOC100039170 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039170
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC436137 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:436137
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 28 Proteins pseudo : _no_value

name	Adam25 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23793 MGI:1345157
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG667041 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667041 MGI:3643054
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC667052 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667052
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 36 Proteins pseudo : _no_value

name	LOC384806 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384806
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adam39 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546055 MGI:3045694
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC384808 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384808
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 Proteins pseudo : _no_value

name	EG667077 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667077 MGI:3647926
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 5 Proteins pseudo : _no_value

name	Slc7a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11988 MGI:99828
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Pdgfrl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68797 MGI:1916047
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mtus1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102103 MGI:2142572
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Tusc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124248486 GeneID:80286 MGI:1933134
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor suppressor candidate 3 transcript_id : NM_030254.3

name	EG621335 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94383434 GeneID:621335 MGI:3646754
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : predicted gene, EG621335 transcript_id : XM_896373.2

name	Msr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85861253 GeneID:20288 MGI:98257
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : macrophage scavenger receptor 1 transcript_id : NM_031195.2

name	LOC100039072 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149258719 GeneID:100039072
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins product : similar to Ubtf protein transcript_id : XM_001472203.1

name	Fgf20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13447395 GeneID:80857 MGI:1891346
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fibroblast growth factor 20 transcript_id : NM_030610.1

name	2900075B16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149258721 GeneID:78506 MGI:1925756
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs, 6 Proteins product : RIKEN cDNA 2900075B16 gene, transcript variant 1 transcript_id : XM_357872.6

name	Zdhhc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142357536 GeneID:70546 MGI:1923452
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, DHHC domain containing 2 transcript_id : NM_178395.3

name	Cnot7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801824 GeneID:18983 MGI:1298230
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CCR4-NOT transcription complex, subunit 7 transcript_id : NM_011135.3

name	Vps37a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111955226 GeneID:52348 MGI:1261835
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vacuolar protein sorting 37A (yeast) transcript_id : NM_033560.3

name	Mtmr7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:103472016 GeneID:54384 MGI:1891693
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myotubularin related protein 7 transcript_id : NM_001040699.1

name	LOC100039179 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149258723 GeneID:100039179
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs product : hypothetical protein LOC100039179 transcript_id : XM_001472328.1

name	Adam24 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384630 GeneID:13526 MGI:105984
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : a disintegrin and metallopeptidase domain 24 (testase 1) transcript_id : NM_010086.3

name	Adam25 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6752969 GeneID:23793 MGI:1345157
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : a disintegrin and metallopeptidase domain 25 (testase 2) transcript_id : NM_011781.1

name	LOC384806 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:57222285 GeneID:384806
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : similar to testase-8 transcript_id : NM_001009548.1

name	Adam39 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119392067 GeneID:546055 MGI:3045694
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : a disintegrin and metallopeptidase domain 39 transcript_id : NM_001025380.3

name	Slc7a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113680129 GeneID:11988 MGI:99828
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 transcript_id : NM_007514.3

name	Slc7a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113680232 GeneID:11988 MGI:99828
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 transcript_id : NM_001044740.1

name	Pdgfrl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476141 GeneID:68797 MGI:1916047
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : platelet-derived growth factor receptor-like transcript_id : NM_026840.2

name	Mtus1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111074533 GeneID:102103 MGI:2142572
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial tumor suppressor 1 transcript_id : NM_001005863.2

name	Mtus1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111074539 GeneID:102103 MGI:2142572
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial tumor suppressor 1 transcript_id : NM_001005864.2

name	Mtus1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111074537 GeneID:102103 MGI:2142572
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial tumor suppressor 1 transcript_id : NM_001005865.2

name	Tusc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124248487 GeneID:80286 MGI:1933134
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA]; GO:0008250 - oligosaccharyl transferase complex [Evidence ISS] GO_function : GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Evidence ISS] GO_process : GO:0018279 - protein amino acid N-linked glycosylation via asparagine [Evidence ISS] codon_start : 1 exception : unclassified translation discrepancy note : putative prostate cancer tumor suppressor product : tumor suppressor candidate 3 protein_id : NP_084530.3

name	EG621335 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82917355 GeneID:621335 MGI:3646754
definition	codon_start : 1 product : hypothetical protein protein_id : XP_901466.1

name	Msr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85861254 GeneID:20288 MGI:98257
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005319 - lipid transporter activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005044 - scavenger receptor activity [Evidence IEA] GO_process : GO:0006897 - endocytosis [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA]; GO:0006898 - receptor mediated endocytosis [Evidence IEA] codon_start : 1 note : scavenger receptor product : macrophage scavenger receptor 1 protein_id : NP_112472.2

name	LOC100039072 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149258720 GeneID:100039072
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472253.1

name	Fgf20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13447396 GeneID:80857 MGI:1891346
definition	codon_start : 1 exception : unclassified translation discrepancy product : fibroblast growth factor 20 protein_id : NP_085113.1

name	2900075B16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149258722 GeneID:78506 MGI:1925756
definition	codon_start : 1 product : hypothetical protein LOC78506 isoform 1 protein_id : XP_357872.6

name	Zdhhc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30409974 CCDS:CCDS22252.1 GeneID:70546 MGI:1923452
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016409 - palmitoyltransferase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0018345 - protein palmitoylation [Evidence IDA] codon_start : 1 product : zinc finger, DHHC domain containing 2 protein_id : NP_848482.1

name	Cnot7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755126 CCDS:CCDS22253.1 GeneID:18983 MGI:1298230
definition	GO_component : GO:0030014 - CCR4-NOT complex [Evidence IPI]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0016563 - transcriptional activator activity [Evidence IDA]; GO:0016564 - transcriptional repressor activity [Evidence IEA] GO_process : GO:0016481 - negative regulation of transcription [Evidence IEA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : catabolite repressor protein (CCR4)-associative factor 1; POP2 homolog product : CCR4-NOT transcription complex, subunit 7 protein_id : NP_035265.1

name	Vps37a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981032 CCDS:CCDS22254.1 GeneID:52348 MGI:1261835
definition	GO_function : GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : vacuolar protein sorting 37A protein_id : NP_291038.2

name	Mtmr7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:103472017 GeneID:54384 MGI:1891693
definition	GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0005624 - membrane fraction [Evidence IDA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004437 - inositol or phosphatidylinositol phosphatase activity [Evidence IDA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0046839 - phospholipid dephosphorylation [Evidence IEA]; GO:0006470 - protein amino acid dephosphorylation [Evidence IEA] codon_start : 1 product : myotubularin related protein 7 protein_id : NP_001035789.1

name	LOC100039179 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149258724 GeneID:100039179
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472378.1

name	Adam24 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981793 CCDS:CCDS22255.1 GeneID:13526 MGI:105984
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005178 - integrin binding [Evidence ISS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence ISS]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007229 - integrin-mediated signaling pathway [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : disintegrin 5; testase 1; a disintegrin and metalloprotease domain 24 (testase 1) product : a disintegrin and metalloproteinase domain 24 (testase 1) protein_id : NP_034216.2

name	Adam25 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6752970 CCDS:CCDS22256.1 GeneID:23793 MGI:1345157
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005178 - integrin binding [Evidence ISS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA] [Evidence ISS]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007229 - integrin-mediated signaling pathway [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : testase 2; a disintegrin and metalloprotease domain 25 (testase 2) product : a disintegrin and metalloprotease domain 25 protein_id : NP_035911.1

name	LOC384806 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:57222286 GeneID:384806
definition	codon_start : 1 function : proteolytic enzyme product : hypothetical protein LOC384806 protein_id : NP_001009548.1

name	Adam39 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119392068 GeneID:546055 MGI:3045694
definition	GO_process : GO:0007229 - integrin-mediated signaling pathway [Evidence IEA] codon_start : 1 product : testase 9 protein_id : NP_001020551.3

name	Slc7a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113680233 GeneID:11988 MGI:99828
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015359 - amino acid permease activity [Evidence IEA]; GO:0015171 - amino acid transporter activity [Evidence IEA]; GO:0005279 - amino acid-polyamine transporter activity [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0015179 - L-amino acid transporter activity [Evidence IDA] GO_process : GO:0006865 - amino acid transport [Evidence IEA]; GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0015807 - L-amino acid transport [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; amino acid transporter, cationic 2 (low affinity); cationic amino acid transporter 2B; cationic amino acid transporter 2A; cationic transporter CAT2 product : solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 isoform 2 protein_id : NP_001038205.1

name	Slc7a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113680130 CCDS:CCDS22258.1 GeneID:11988 MGI:99828
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015359 - amino acid permease activity [Evidence IEA]; GO:0015171 - amino acid transporter activity [Evidence IEA]; GO:0005279 - amino acid-polyamine transporter activity [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0015179 - L-amino acid transporter activity [Evidence IDA] GO_process : GO:0006865 - amino acid transport [Evidence IEA]; GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0015807 - L-amino acid transport [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; amino acid transporter, cationic 2 (low affinity); cationic amino acid transporter 2B; cationic amino acid transporter 2A; cationic transporter CAT2 product : solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 isoform 1 protein_id : NP_031540.2

name	Pdgfrl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42476142 CCDS:CCDS22259.1 GeneID:68797 MGI:1916047
definition	codon_start : 1 exception : mismatches in translation product : platelet-derived growth factor receptor-like protein_id : NP_081116.2

name	Mtus1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54312129 GeneID:102103 MGI:2142572
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; AT2 receptor-interacting protein 1; coiled-coiled tumor supressor gene 1; angiotensin II AT2 receptor-interacting protein 1 product : mitochondrial tumor suppressor 1 isoform 1 protein_id : NP_001005863.1

name	Mtus1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54312135 GeneID:102103 MGI:2142572
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; AT2 receptor-interacting protein 1; coiled-coiled tumor supressor gene 1; angiotensin II AT2 receptor-interacting protein 1 product : mitochondrial tumor suppressor 1 isoform 3 protein_id : NP_001005864.1

name	Mtus1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111074538 GeneID:102103 MGI:2142572
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : isoform 4 is encoded by transcript variant 4; AT2 receptor-interacting protein 1; coiled-coiled tumor supressor gene 1; angiotensin II AT2 receptor-interacting protein 1 product : mitochondrial tumor suppressor 1 isoform 4 protein_id : NP_001005865.2

name	LOC100038974 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100038974
definition	number : 1 pseudo : _no_value

name	LOC100038974 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100038974
definition	number : 2 pseudo : _no_value

name	LOC100038974 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100038974
definition	number : 3 pseudo : _no_value

name	LOC632066 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632066
definition	number : 1 pseudo : _no_value

name	LOC632066 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632066
definition	number : 2 pseudo : _no_value

name	LOC632066 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632066
definition	number : 3 pseudo : _no_value

name	LOC632066 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632066
definition	number : 4 pseudo : _no_value

name	EG621431 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:621431
definition	number : 6 pseudo : _no_value

name	EG621431 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:621431
definition	number : 5 pseudo : _no_value

name	EG621431 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:621431
definition	number : 4 pseudo : _no_value

name	EG621431 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:621431
definition	number : 3 pseudo : _no_value

name	EG621431 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:621431
definition	number : 2 pseudo : _no_value

name	EG621431 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:621431
definition	number : 1 pseudo : _no_value

name	LOC666959 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666959
definition	number : 1 pseudo : _no_value

name	LOC666959 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666959
definition	number : 2 pseudo : _no_value

name	LOC666959 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666959
definition	number : 3 pseudo : _no_value

name	LOC666959 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666959
definition	number : 4 pseudo : _no_value

name	EG632166 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632166
definition	number : 1 pseudo : _no_value

name	EG632166 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632166
definition	number : 2 pseudo : _no_value

name	LOC100039170 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039170
definition	number : 1 pseudo : _no_value

name	LOC436137 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:436137
definition	number : 1 pseudo : _no_value

name	EG667041 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667041
definition	number : 1 pseudo : _no_value

name	EG667041 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667041
definition	number : 2 pseudo : _no_value

name	LOC667052 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667052
definition	number : 1 pseudo : _no_value

name	LOC384808 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384808
definition	number : 2 pseudo : _no_value

name	LOC384808 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384808
definition	number : 1 pseudo : _no_value

name	LOC667019 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149258725 GeneID:667019
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins product : similar to High mobility group box 1 pseudo : _no_value transcript_id : XR_030685.1

name	EG667077 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94383445 GeneID:667077 MGI:3647926
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 5 Proteins product : predicted gene, EG667077 pseudo : _no_value transcript_id : XR_001968.1

clone name	MSMg01-064H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-500C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-320J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-184O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-205J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-213C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356E06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-322F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041H13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330B24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328A24
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-085P03.T7 (MSMg01no085_p03.b1)	MSMg01-085P03.TJ (MSMg01no085_p03.g1)
ACC	AG305387	AG305388
length	1,220	1,191
length of high quality (start - end)	476 (71 - 546)	276 (127 - 402)
definition	CHROMAT_FILE: MSMg01no085_p03.b1 PHD_FILE: MSMg01no085_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:25 2005	CHROMAT_FILE: MSMg01no085_p03.g1 PHD_FILE: MSMg01no085_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:25 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAA TTGAGGAATACCACATTACTGAGAAACACCTGAAAAAAAAATGTTCAACA TCCTTCATTCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTTCACC TCATACCAGTCAGAATGGCTAAGAACAAAAACTCAGGTGACAACAGATGC TGGCGAGAATGTGTAGAAAGAAGAACACTCCTCCATTGCTGGTGGGATTA CAAGCTGGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTTAGAAAAT TGCACATAGTACTACCTGAGGACCCAGGAATACCACTCCTGGGCATATAT CCAGAAGATGCTCTGACATATAACAAGGACACATGCTCCACTATGTTCAT AGCAGCCTTATTTATAATAGCCAGAAGCTGGATAGAACCCAGATGTCCTT CTATAGAGGAATGGGTACAGGTCTATTCTTATTTACCCCAAAGGGGAAGG AGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG ATATATATTTTCTTCTTTCCCCTCCTATATTTTTTTCCTCTTTCACTTTC CTTCCTTTCTTTCTTCTTCTCTCTTTTTCCTATATTTTCTTCTTCATCTT TTTTCTTCTCCATCCTCTCCTCTCCTCCTCCCCTTCTCTTTTCTTTTTTT TCCTTTTTTCTACCTCTCCTTCTTCTCAATTCCTCACTTCTATTTTCCCT ATCCTCTCTCTATTGTCCCTATCTCTTATCTTTTTTTCTCTTCCTTCTCC CTCTTTTTCTTCTATATATCTTCCTTTTTTTCTCTTCTTTCACTTTTTTT CCTCTCTTTTTCCTTTTTCTTTCTATCTCTTTTTCTTTCCTTTCTCTATT CTCTTCCCACCCCTTACTACTCTCCTTTTTCTTATTCTTTCCTCTCTCTT AATCTTTTCTCTTTTTCTTTATTCTTCTTTTTCCTTTTTCCTTTCCTCAC TTTTCTTTCTCTTTTTCTTTCTCTTCATTCCTCTCTTCCCCGTTTTCTTT TTTCTCAAATTCTATCCTTTTTATCCTTTCCCTCCATTTCTTTCTACTTC TCCTATCCACTTTTTTTCCTTCTATCTCTCTATCTCCTTCTATCTCTCAT ACTTTTTCTTCCGCTCACCTACCACTTATTCCTTTCTCCTATCCCTCCTT TAACTCCCTTCACTCTCCCG	TTTTTAAGCACGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXNGAACTTTTACATCCCCACAACTAAAAGATAAAT TGGAAACACTGTACTTCTAAATATGAAAATGATGATAATATTGTTATCTG ATGGTGTGATTTATAAAGTTTAACTCAGAAATTTTTGGCTCAACTTTGGA AACTTTACGACCAATTTTATCTGAGTGAGTGAATAATTGCTTTATGTTTC GTGTCAGTAGTTCCCAGCACTCAAAATTTTTCTGTTTTTCCAGTTTTACC AAGACTATGTAGCACTGAAGTTCTTCTCTAATGAGGTAGAATATGAGCTT GCTCCATCTTTCCATGACAACTCTCAACTTCCCATCTATCAAATCACCCT ATTTTTTTTCTAACCTAACATTGTAGCGTTAATAGCATTGTTGTAGAGTC GATGTGTTTATATAACTTTTAATATAATACCTGACTTAGAGGTAGTAGCA CTAATGCTCTTCAACAATCTACTCACATTACCTATGCTTTTTCATTTACT TTTTTTATTATTAATCATCCCATTCGTTCCACATCTCAAATGCGATCACA TTTCCTGGAAACCCCTCCACTCACCCACCCTCATCCCACATCTGCCCTAC CCCTCCCCTCTGTCTGTATGAGCCTGCTCCCCCATTCACCCACCCTCTTC TGTTCCTCTTACTCTGGTTTCTTTATACTCCCCCGGTACCTAGCTCCCTC CCCCCCCATTGCTGCCTCTCACCTATTTTTTTTTTTTTTTGTACTCCTTA TATACTTATCTCCCTTCCTTTCTCCTCCAATTCTTCTTCCCTCATCTTCT CCCTCCTCTTTTCCTTTCCCTTTTTACCCCTCTTCTACTCACCCTCTCTC ACCCTTCCTCCCCTCTCTTACATTCTCTTACCTCTCCTCCTTCTCTCTCC TCCCTCTCTTCTCCTTCTCTCACTTTCCCTTTCTTCCTCCCTTCCCCCTC TTCCTTTCTCTTCTCCCTTTTCTCTCTATCTCCTTCTCTCTCCTTCCCTT CTCCCTCCCTTCCCTCTCTTCCTTCCCCTCTTTTCTCTCCTATCTCTCTT CTCTCTCCCTTTCTCCTTCTTTCTGCAACTTCTCTTATCCACCTTCCTTC TTTTTCCCCTTTTCTCCTATATCTCTTCTCCCTTTCACTTT
quality values	Open. Hide. 8 8 15 8 8 8 11 13 14 14 13 12 12 10 10 10 16 16 24 24 24 29 28 28 29 36 42 40 42 42 42 42 42 48 48 50 50 48 57 57 43 47 43 43 57 36 36 34 32 32 35 48 50 50 50 50 37 37 37 22 19 10 10 10 10 9 12 9 11 12 18 15 25 30 43 48 48 38 50 50 50 50 50 50 53 59 59 59 59 59 57 57 57 53 53 50 59 50 50 47 36 30 17 12 6 6 6 6 9 19 23 39 39 37 37 43 48 50 53 57 59 59 59 57 57 57 57 57 57 59 57 57 57 57 57 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 51 51 50 68 68 68 68 68 68 68 68 68 68 51 51 51 50 47 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 68 68 68 68 68 68 68 68 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 62 62 62 62 68 68 68 62 62 62 62 62 62 62 44 44 43 43 52 62 62 68 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 62 62 62 62 62 62 52 52 52 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 68 68 68 68 62 68 68 68 62 62 43 41 41 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 43 41 18 18 15 15 13 12 13 15 38 38 41 41 42 43 43 59 59 68 68 68 68 68 59 59 59 57 57 68 68 68 68 59 57 57 57 57 57 57 57 59 59 59 57 57 52 44 42 43 42 43 52 59 57 57 57 57 59 57 54 54 57 57 57 57 57 57 52 52 59 59 52 52 52 57 52 38 38 21 21 35 44 44 50 35 37 35 37 59 59 59 59 59 48 59 59 57 57 57 57 57 48 48 46 57 37 43 43 44 43 43 44 43 48 44 44 43 37 37 44 44 40 40 37 39 43 43 39 39 35 35 32 42 39 40 40 43 43 43 35 35 32 36 37 36 36 32 28 28 22 22 14 18 15 14 10 8 8 8 8 8 11 11 10 9 9 9 9 9 8 8 8 8 8 8 13 13 12 10 10 10 9 9 9 9 9 10 12 12 11 11 10 8 8 8 8 8 8 8 8 8 8 8 8 9 9 10 10 12 10 8 8 8 8 8 8 8 6 7 8 8 8 8 8 8 10 10 11 9 9 10 11 10 10 8 8 9 9 9 9 10 8 10 11 15 15 13 8 8 8 8 8 10 15 12 12 10 8 8 8 10 8 8 8 8 8 8 8 8 8 10 8 7 7 7 8 12 10 9 9 12 10 12 10 10 8 8 8 8 8 8 8 8 10 10 10 8 8 8 8 8 11 10 10 10 10 10 10 8 8 8 10 8 8 10 8 8 8 8 8 10 16 10 10 9 10 10 10 12 10 10 9 9 9 12 16 16 11 8 8 6 6 8 8 8 6 7 10 8 10 9 9 8 8 6 8 8 8 8 10 10 10 8 10 11 9 9 9 9 9 9 8 8 6 6 8 6 9 8 12 8 8 8 8 7 6 8 8 10 10 15 10 8 8 6 6 8 8 8 8 8 8 8 8 13 8 8 8 8 8 8 9 9 12 10 8 8 8 8 8 8 8 6 6 8 8 8 10 10 10 13 11 15 10 10 12 9 9 9 10 10 13 11 10 10 8 8 8 8 8 9 11 11 12 8 10 7 6 8 8 10 11 13 13 15 10 10 10 18 13 14 11 10 9 9 8 8 7 6 8 8 8 8 10 10 14 12 15 8 8 8 8 8 8 8 9 12 12 10 8 8 8 8 8 10 13 13 10 10 6 6 9 6 6 8 8 11 10 9 8 8 8 8 8 7 9 11 10 10 10 8 8 8 8 8 9 9 8 8 10 13 8 8 10 8 8 8 8 8 8 10 12 10 8 6 6 8 6 6 8 8 10 9 8 10 14 12 12 11 16 14 11 10 8 8 6 6 10 10 12 12 12 15 11 8 8 8 8 8 13 9 8 9 9 9 9 13 13 15 9 8 8 6 6 8 10 9 8 10 10 10 11 12 12 8 8 8 11 9 10 17 20 22 19 13 10 10 8 8 9 9 10 10 11 14 10 12 9 9 8 8 10 8 8 9 9 9 10 11 10 10 10 10 10 17 12 12 10 8 8 8 8 8 8 9 10 9 9 9 10 10 10 10 10 8 8 7 8 8 9 11 18 20 13 15 13 10 10 13 10 10 11 17 10 10 10 16 15 13 10 10 11 15 10 10 9 9 8 8 8 8 8 8 10 8 8 10 10 8 8 8 8 8 8 8 8 11 8 8 9 9 9 9 16 16 18 15 13 12 9 9 8 8 12 10 8 8 9 15 12 10 8 8 8 8 8 6 6 8 8 11 12 8 8 10 8 8 8 8 10 8 8 8 7 6 8 6 8 8 8 9 9 9 9 12 8 8 11 8 8 8 8 8 6 6 6 6 8 8 6 6 8 8 9 8 7 6 8 7 7 12 13 13 15 8 8 11 8 10 12 10 8 8 6 6	Open. Hide. 12 15 16 20 19 17 6 6 6 6 6 6 6 6 6 10 8 9 6 6 6 6 8 8 14 7 8 8 6 8 7 9 15 17 17 8 9 10 21 21 33 24 28 35 36 35 35 36 37 36 36 35 35 35 36 36 44 44 50 50 47 47 59 27 17 3 0 3 6 6 9 13 12 10 8 8 8 8 8 8 8 8 7 7 8 8 15 22 30 33 33 37 59 50 53 53 53 53 53 57 53 50 50 50 42 47 37 33 23 21 8 8 6 8 8 8 8 8 8 9 9 10 15 10 13 11 11 21 28 37 43 48 59 57 57 53 53 53 53 53 53 53 53 53 53 44 44 42 48 48 43 43 68 68 68 68 68 68 59 54 68 68 68 50 50 50 68 68 50 50 50 48 50 47 44 36 23 23 44 44 59 68 68 59 57 57 43 43 40 44 44 43 43 46 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 57 59 59 59 57 57 57 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 52 57 57 57 57 57 59 59 59 59 57 52 57 59 59 68 68 68 59 68 59 59 54 59 59 68 68 57 57 52 52 52 57 57 68 57 57 57 57 57 57 57 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 68 59 59 57 59 57 57 57 44 32 18 14 14 14 13 15 26 32 59 59 59 57 57 68 68 57 57 54 54 59 59 59 59 57 48 48 48 57 48 59 54 47 47 47 46 57 48 68 68 68 57 57 59 59 59 59 59 59 57 59 59 57 57 57 57 57 57 59 59 59 59 48 59 59 59 59 47 47 30 30 23 23 18 15 20 21 25 17 17 12 12 12 27 30 59 59 59 59 59 48 34 30 29 12 12 25 28 46 57 39 59 43 40 36 28 25 25 33 36 37 41 47 43 28 28 15 16 12 15 11 11 12 12 12 11 11 15 24 32 37 37 28 34 30 28 14 15 18 32 25 39 30 30 30 32 32 30 30 30 32 42 39 48 37 43 28 18 20 16 16 20 27 27 28 28 18 18 14 15 15 32 32 46 23 23 11 11 10 10 13 15 21 21 20 24 20 20 20 32 36 42 39 37 37 32 37 28 32 27 32 24 24 14 19 28 32 37 28 28 22 36 36 42 28 28 28 28 28 35 35 42 43 44 44 43 43 43 43 43 43 43 41 39 18 17 9 9 9 12 18 34 34 25 12 18 11 10 15 10 10 18 21 12 22 19 23 19 12 11 23 23 13 13 14 12 12 10 10 10 10 12 13 28 28 48 28 23 22 11 9 9 13 13 14 14 30 28 14 13 10 10 10 12 16 15 24 16 17 12 12 13 16 10 10 13 18 16 22 23 29 28 21 21 21 29 29 35 32 29 18 16 14 14 14 27 32 47 40 40 24 19 15 17 15 15 16 10 9 9 9 9 9 11 11 9 9 12 12 15 13 15 15 15 16 12 16 12 10 10 10 10 9 8 8 8 6 6 8 8 8 8 8 9 9 10 11 8 9 8 8 8 8 11 9 9 8 8 6 6 10 8 8 8 10 10 9 9 8 8 8 8 9 13 13 8 8 8 8 8 8 10 8 8 8 8 8 10 7 7 8 8 8 8 8 10 11 8 8 8 8 8 8 8 8 8 10 15 10 8 9 9 9 9 14 9 9 9 15 14 9 9 9 10 8 8 10 15 10 8 8 8 10 8 8 8 8 10 7 6 8 6 6 8 8 8 8 8 8 11 11 12 16 19 14 13 11 8 8 7 7 8 10 11 11 11 11 11 13 12 12 10 13 18 11 13 13 16 12 9 9 9 9 8 8 8 8 8 10 9 8 8 10 8 8 8 11 8 10 8 10 8 9 8 8 8 10 10 8 8 7 9 9 9 10 11 11 8 6 7 6 6 6 10 8 10 10 8 8 10 9 9 9 9 10 10 10 8 10 8 8 8 8 8 8 10 8 8 8 10 10 12 11 10 10 15 18 22 19 18 13 11 10 9 10 10 10 8 8 8 6 6 8 8 10 10 10 9 9 8 8 10 8 8 8 8 8 8 8 8 8 8 12 11 10 8 8 8 12 10 10 13 12 9 9 9 9 9 10 15 10 9 10 8 6 6 8 8 11 11 10 10 10 10 9 9 10 13 10 10 13 13 12 12 11 11 11 9 9 8 8 8 8 8 8 10 8 8 8 10 10 12 10 10 8 8 8 10 8 8 8 8 8 8 10 6 6 8 8 8 8 10 10 15 8 8 7 7 6 6 8 10 8 8 8 9 9 12 9 9 12 13 12 8 8 8 10 13 22 12 11 9 9 9 11 12 12 10 13 8 8 8 8 6 6 8 8 10 10 9 14 12 12 14 12 12 8 8 8 13 11 13 8 8 8 6 7 11 10 10 10 8 8 8 8 8 8 8 8 9 9 9 8 8 8 8 8 8 9 8 8 8 8 8 8 7 7 8 8 8 8 12 12 13 12 8 8 8 8 9 10 10 8 8 8 8 8 8 8 10 8 8 8 11 9 10 8 8 8 8 8 9 8 10 13 13 20 11 10 8 6 6 8 10 13 15 8 8 8 12 14 10 15 15 16 10 10 6 6 8 8 8 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no085_p03.g1 MSMg01no085_p03.g1 CHROMAT_FILE:
MSMg01no085_p03.g1 PHD_FILE: MSMg01no085_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:25 2005
         (276 letters)



>mm_chr8_41136881_41137556
          Length = 676

 Score =  524 bits (271), Expect = e-153
 Identities = 274/275 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgatgataatattgttatctgatggtgtgatttataaagtttaactcagaaattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgatgataatattgttatctgatggtgtgatttataaagtttaactcagaaattttt 260

                                                                       
Query: 61  ggctcaactttggaaactttacgaccaattttatctgagtgagtgaataattgctttatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctcaactttggaaactttacgaccaattttatctgagtgagtgaataattgctttatg 320

                                                                       
Query: 121 tttcgtgtcagtagttcccagcactcaaaatttttctgtttttccagttttaccaagact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcgtgtcagtagttcccagcactcaaaatttttctgtttttccagttttaccaagact 380

                                                                       
Query: 181 atgtagcactgaagttcttctctaatgaggtagaatatgagcttgctccatctttccatg 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtagcactgaagttcttctctaaggaggtagaatatgagcttgctccatctttccatg 440

                                              
Query: 241 acaactctcaacttcccatctatcaaatcacccta 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 441 acaactctcaacttcccatctatcaaatcacccta 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information