GCGGCCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCTGGTGT
AATTTACGGCTGGTGTTATTCATGCCTAGGACTATGCAAATATTCTACTG
CGGCTCATGACAGCACACACTGGCACACCAGCAAACGCACCAAAAACACA
GGGCCTCGACAGGACTGTAAATGCCCGCAGTGCCAGTTTCTGTGATCTTC
AACTATTCTAATTGAGACTTGAGCTTTCATTGTTTACATGTAAAGGCACT
GCATTTTGCAAGTTAATAAAAACCCACAGTGAAGCATAATGTATTATTTA
TCTTGAGGAAAAGAACAAGTACTGTCGGTTAAGTGGAGGCTCAGTCTGGG
CAGATACAGCTGTAAGTCTACAGTAAGAACAGGTATGTGTCTAGGGAAAT
ACTTCCGAAGCATTTCCCTGGCAAGCAGAAGCAGGGATCTGAGTTCAAAT
CCCCTAGAACCACAAGAAAGCACTGGGCACAGTGGTACTTAATCAGATAC
TCAGGTACTGTAATCAGATCTCTGAGGAGGCAGAGACAAGGTCACTGGCT
GGCCTAATACCGAGGTGGATGGCATTCAAGGTATGACAGCTTTAAGCTAT
TTTTCTGACTCCACATTCATGTGTGTGCACGCGTGCACATACACCCACAC
CCACTTACTTCTCGCATAATCATCCCTGTTTCTCTCAAATGTATATATCT
CGTACACTCCTTCACACTATTA

CAATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCTACTGCTCCTCTGTTCAGCTT
GAGGTTCAAGACCTCAGAGACCCTGAGTGAAGCAGCTTCCCAGAGCTCTG
GGAGAGTTGGGAGTCTCAGGAGAGATGGGGGAAAGTTCAGAGATGCCATA
GGCTGTTAGAGATGAGGGTTGTGGTTTAAATACCCAGTGATGGGGTACTG
CCAAGTGTGTACAGCAAGAGCACATGAAGCCAGGAAGAGGGTGTTGGAAG
AGGGAAATGTAGATGCAATCTTCTTTTTTTAACATCAGGGGTATCTGGAA
GGGACCTTAGGGAACCTGGGAAGCAAGCCAAAGCTGTACCTGTTTCTCAG
AGATGTTGGAGGTTGTGCCACGCGAAGGAGAGCTCAACTGCTGTTAAGTT
CCTTAAAATGGGTTGAAGAGGTGACAAGCAATGTCCCATGGGGCTGGTCA
GATGCTACGTCAGCGTCTAAGACTTCCTGTCTAACATTTGGAAGACCTGA
AGCTCCCGTGCATCCATCCCAGACTTTAGCAGCACAGATGGCGCCTACCA
CTATCCTGAATTTTTTTTTTTCATACTGGTTTTTCCTTGTGTATCCTGGC
TGTCCTGGTACTTCCTCTTTTTTCTATTCTGGCTTCCTAACTCACAATTC
TGTTTGGCTTCTGCCTTCCCTTGTTCCTGTT

Query= MSMg01no086_c13.b1 MSMg01no086_c13.b1 CHROMAT_FILE:
MSMg01no086_c13.b1 PHD_FILE: MSMg01no086_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:47 2005
         (577 letters)



>mm_chr8_10608096_10609072
          Length = 977

 Score = 1027 bits (531), Expect = 0.0
 Identities = 552/559 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattctggtgtaatttacggctggtgttattcatgcctaggactatgcaaatattcta 66
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggaattctggtgtaatttatggctggtgttattcatgcctaggactatgcaaatattcta 500

                                                                       
Query: 67  ctgcggctcatgacagcacacactggcacaccagcaaacgcaccaaaaacacagggcctc 126
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 499 ctgcggctcatgacagcacacactggcacaccagcaaatgcaccaaaaacacagggcctt 440

                                                                       
Query: 127 gacaggactgtaaatgcccgcagtgccagtttctgtgatcttcaactattctaattgaga 186
           |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 439 gacaggactgtaaatgcctgcagcgccagtttctgtgatcttcaactattctaattgaga 380

                                                                       
Query: 187 cttgagctttcattgtttacatgtaaaggcactgcattttgcaagttaataaaaacccac 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttgagctttcattgtttacatgtaaaggcactgcattttgcaagttaataaaaacccac 320

                                                                       
Query: 247 agtgaagcataatgtattatttatcttgaggaaaagaacaagtactgtcggttaagtgga 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agtgaagcataatgtattatttatcttgaggaaaagaacaagtactgtcggttaagtgga 260

                                                                       
Query: 307 ggctcagtctgggcagatacagctgtaagtctacagtaagaacaggtatgtgtctaggga 366
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggctcagtctgggcagatacggctgtaagtctacagtaagaacaggtatgtgtctaggga 200

                                                                       
Query: 367 aatacttccgaagcatttccctggcaagcagaagcagggatctgagttcaaatcccctag 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aatacttccgaagcatttccctggcaagcagaagcagggatctgagttcaaatcccctag 140

                                                                       
Query: 427 aaccacaagaaagcactgggcacagtggtacttaatcagatactcaggtactgtaatcag 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 aaccacaagaaagcactgggcacagtggtacttaatcagatactcaggtactgtaatcag 80

                                                                       
Query: 487 atctctgaggaggcagagacaaggtcactggctggcctaataccgaggtggatggcattc 546
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 79  atctctgaggaggcagagacaaggtcactggctggcctaataccgaggttgatggcattc 20

                              
Query: 547 aaggtatgacagctttaag 565
           |||||||||||||||||||
Sbjct: 19  aaggtatgacagctttaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no086_c13.g1 MSMg01no086_c13.g1 CHROMAT_FILE:
MSMg01no086_c13.g1 PHD_FILE: MSMg01no086_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:47 2005
         (246 letters)



>mm_chr8_10497544_10498189
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctactgctcctctgttcagcttgaggttcaagacctcagagaccctgagtgaagcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctactgctcctctgttcagcttgaggttcaagacctcagagaccctgagtgaagcagc 260

                                                                       
Query: 61  ttcccagagctctgggagagttgggagtctcaggagagatgggggaaagttcagagatgc 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcacagagctctgggagagttgggagtctcaggagagatgggggaaagttcagagatgc 320

                                                                       
Query: 121 cataggctgttagagatgagggttgtggtttaaatacccagtgatggggtactgccaagt 180
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 catagactgttagagatgagggttgtagtttaaatacccagtgatggggtactgccaagt 380

                                                                       
Query: 181 gtgtacagcaagagcacatgaagccaggaagagggtgttggaagagggaaatgtagatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtacagcaagagcacatgaagccaggaagagggtgttggaagagggaaatgtagatgc 440

                 
Query: 241 aatctt 246
           ||||||
Sbjct: 441 aatctt 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)