BAC Information

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BAC

Clone NameMSMg01-086H01
Chromosome8 (Build37)
Map Location 52,473,310 - 52,473,500
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039954, LOC100039966, LOC667517
Downstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086H01.T7 (MSMg01no086_h01.b1)MSMg01-086H01.TJ (MSMg01no086_h01.g1)
ACCAG305751AG305752
length769793
length of high quality
(start - end)
297 (131 - 427)193 (176 - 368)
definitionCHROMAT_FILE: MSMg01no086_h01.b1 PHD_FILE: MSMg01no086_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:11 2005CHROMAT_FILE: MSMg01no086_h01.g1 PHD_FILE: MSMg01no086_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCCTTCCTCTNCCCCCNCNCCTTCCCCTCNCCCTTCCCNCCCTTTCT
AACCNNNNCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCACTATGCTTGCTAAACATTCAAGTGGAGATGTCAA
AATTCAGTTATATAAGTAATAAATTCAGCCATGAGTTCTGAGGTTGAAGA
TGGAGACTTGGGACTTGCCAGCCTATTTAAAGTAAGGAGAATGGATGAGG
TTGCAGATTGAGTACCGAGGCAGAAAAATGTCCAAGGACTAAATTCTGGG
GCATCTCTGCATTTATATGTCAGAGAGAAATAGATAACACATAAAAGAAA
GGGAAATGATTAAGTAGGATTGAGTGTACACAGGACATGGGTAGGTCAAA
TAAGATGTGATCTGAGGTTAATAACGGAAAGGTCACTGCATACACCAAGA
TGAACAGTTTTTGCGTGGATCCGGAGATGAATTCTCAAAGCAGTGAGTTC
AACAGCAAATGTAGAAGTAATGGACGAAGCTCATACAGAAAATCGCTCTG
AGACTTTTCCTCTAATGTTAACCTACGGAAGGACATATATAACACCGCTA
TTATTATACCTTACTAAAAACCAATATAGTATCATGATTATGCTACATCT
GAAACATCCACCACCATTTTTTTATATTTTACCTTTTGTACTATAGCACA
ATTGCACTATCTCTTTGTTACCATTTTTACTATATACCAAACTCCGGTTA
TTACTCTCTTTATTTGACC
TTTTNNTTTTNNNNTTTTTTCCCTTTNNCTTNNCCCTCTTNTCCTCCCTG
CTTNNNNCTCTATGAAGTGGGTAGCCTGGCGNCGCCTGATTCGTTACTGA
GGNGAACNANAGAAGTTGCACAAAAAGCGCGNAGACNGCAAGNNCTCTAA
NCCAAAGTCGACTGCCAGATCATACCCATGAGTTTTTTTTTTAATTAATG
ACATGATTCTATTTATTTTGGTAGGAAAATCACATTATCAAGTTAACCAT
GTGATGAGAAAGCTGGAGCTTGGAATAAAATGCTATCTACCTGGTCCTAG
ATAAAGGAGTTCAGGCAGATAGTGAGTTTAAACAAAATGCTCAAGATTCC
CATAATTAAAATTTTCAGGTATTTTTTTTTTATAGAAAAAGCTCCCAACC
ACCCTGGAAGAGTTTTTTTTATCCCGCCCCCCCCACCTACCGTGGACACT
ATGTCCCCTCCCTAGAATTGGGAACAAAACAACCAAGAAAAGGAGTTACC
GAGATTCCGGTTGCACCCCGACATCAATGGATGGACTCTGTTTCAGACTG
CCCTATCCTGCTTCTCCCTTCCTTACCTCTGTCACTAAACGCTTGACCCC
TATTGCCTACCATTACCCCTGAACCCATTTATCCCATTGCCCCCAAATCG
CTCTTGCGCCCCTCGCAGAATATCACGACCGCCGCCCCTACCCCCACCCC
AGAATCGGTGTGCCTCCAAGGCCGGCCTCTGGGACGGTATTCTTTTTTTT
TTTTTCCTGCCCAGATCTCTCCTCCCCCTCTTTCCCCTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_h01.g1 MSMg01no086_h01.g1 CHROMAT_FILE:
MSMg01no086_h01.g1 PHD_FILE: MSMg01no086_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:11 2005
         (193 letters)



>mm_chr8_52473110_52473700
          Length = 591

 Score =  350 bits (181), Expect = e-101
 Identities = 190/193 (98%), Gaps = 2/193 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatgagttttttttttaattaatgacatgattctatttattttggtaggaaaatcacat 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ccatgagttttttttttaattaatgacatgatt-tatttattttggtaggaaaatcacat 259

                                                                       
Query: 61  tatcaagttaaccatgtgatgagaaagctggagcttggaataaaatgctatctacctggt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 260 tatcaagttaaccatgtgatgagaaagctggagcttggaataaaatgctatccacctggt 319

                                                                       
Query: 121 cctagataaaggagttcaggcagatagtgagtttaaacaaaatgctcaagattcccataa 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 320 cctagataaaggagttcaggcagatagtgagtttaaacaaa-tgctcaagattcccataa 378

                        
Query: 181 ttaaaattttcag 193
           |||||||||||||
Sbjct: 379 ttaaaattttcag 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 591
Length adjustment: 8
Effective length of query: 185
Effective length of database: 583
Effective search space:   107855
Effective search space used:   107855
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)