BAC Information

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BAC

Clone NameMSMg01-086I15
Chromosome8 (Build37)
Map Location 102,122,645 - 102,122,843
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh8, A330008L17Rik
Downstream geneLOC667531, LOC100042069, LOC436054, LOC100042078, LOC100042086
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086I15.T7 (MSMg01no086_i15.b1)MSMg01-086I15.TJ (MSMg01no086_i15.g1)
ACCAG305823AG305824
length703723
length of high quality
(start - end)
196 (104 - 299)567 (66 - 632)
definitionCHROMAT_FILE: MSMg01no086_i15.b1 PHD_FILE: MSMg01no086_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:19 2005CHROMAT_FILE: MSMg01no086_i15.g1 PHD_FILE: MSMg01no086_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCAAAATACCGAGCGGGCGCGGAATTCATTTACATTTGCTATAATAG
AGATTGNNTGAAAACTTGTGAGCATAATCCTATTTTCATAATACCTCTTT
TCTATAACCATCTTTCTTTATAAGGTCCAATAGTTTACCAAAGGTTAATA
TAACTACATTGTTAGGGCAATACTGAGAAGACAATTTTCAGCATCTATGG
TACGAAAGGGTTGTTTGTTTCAAACCATAGTTATTAGATTTGTAGATGAA
CATTTGTAGACTGTTTGCTTACATATGATCACTGATTATATACTTAAGAC
CTACCTATACCAACAATCTAAGTTTATTTGAAATTGTATTTCATAAACAC
CTGGTATGTTGAAGAGATATGATGAAGTAAAGAAGGATACATACTTGTTC
TATAAAAGAAAAAGAAGCCTGGATTCCGCCAAGACTGGTCTGAGCAGGTA
AGAGTGTGGACTGCAGACGCTAACAGCTTCTGGAACAGGCTGAACTCAAA
GAGCTTCTGGGGCAAACCTTGTTTTGGCTCCAGACACCTGGGCACCTTCC
CTGCCAGAGGAGAGGTGTCCATCCTCGCCCGGGAGAGTGTTTCCATACCA
TCTCTGTGAGTCATCATAGACTACACAGGGGAGAAGTGTGTATTATTTAA
GCTAAAAGCTCCTGCGACAGGCTTAACCTATAGAGCTTCTGCGTAAGTAC
ACA
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCTGGAATTCCTCCTCCCCAAAGAATTACAGCTCTATAC
AGCAGACACTCTTAGGCAACCCTTGTGAACAGGTCTTATGTACATTTTGG
GGTGACTTTGGAGTCTACGAGCAGATTCTTTCTTTGGGTTGGTATGAGAT
GTTAGGTTTGCCTCATCTACATGTGGAGTGTCTTCCAGCACTGCCCCTAT
ATGACTGATTGTCACAGTCCTCTCCATGCTGTGTTGTGGTCACATTTTGC
AGGACAGGACGTGGTCAGGAGTATTTGAAACACCTACCATCCTCAGGTAT
ATTCTTAATCACCAGGGAAACACAAATTAAAACCACTTCCAGGTAATGAT
TATTATTATTAAACACACCCATAAGGGTGAATAAGATGAAAAATTCAAGG
GACAGCACAGGCTGGCGAGGATATGGAACAATTGGAACACTCTCCATTGC
TGTTGGGAATGAAAACTTATACAATCATTTTGAATATCAATTTGATGGTG
TGTCAGAAAATTGGAAGTAGTTTTACCTCAAGATGCAGCTACATCACACC
TGAGCACATACCCAAAACATGCTCCACCATGCCATAAGGACACTTGCTCA
ACGATGTTCATAGCAGCTCTATTCTTGATAGTCAGACACTAGAAACAACC
TAGATGTCTCTTATCAGAAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_i15.b1 MSMg01no086_i15.b1 CHROMAT_FILE:
MSMg01no086_i15.b1 PHD_FILE: MSMg01no086_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:19 2005
         (196 letters)



>mm_chr8_102122445_102123044
          Length = 600

 Score =  342 bits (177), Expect = 7e-99
 Identities = 192/199 (96%), Gaps = 4/199 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaccatctttctttataaggtcca----atagtttaccaaaggttaatataactacat 56
           ||||||||||||||||||||||||||    ||||||||||||| ||||||||||||||||
Sbjct: 399 ataaccatctttctttataaggtccaatacatagtttaccaaaagttaatataactacat 340

                                                                       
Query: 57  tgttagggcaatactgagaagacaattttcagcatctatggtacgaaagggttgtttgtt 116
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 339 tgttagggcaatactgagaagacaattttcagcatctatggtatgaaagggttgtttgtt 280

                                                                       
Query: 117 tcaaaccatagttattagatttgtagatgaacatttgtagactgtttgcttacatatgat 176
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tcaaaccatagttagtagatttgtagatgaacatttgtagactgtttgcttacatatgat 220

                              
Query: 177 cactgattatatacttaag 195
           |||||||||||||||||||
Sbjct: 219 cactgattatatacttaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 600
Length adjustment: 8
Effective length of query: 188
Effective length of database: 592
Effective search space:   111296
Effective search space used:   111296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)