BAC Information

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BAC

Clone NameMSMg01-086L22
Chromosome8 (Build37)
Map Location 66,842,913 - 66,843,461
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384831, EG244495, Tll1, LOC100040989
Downstream geneCpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086L22.T7 (MSMg01no086_l22.b1)MSMg01-086L22.TJ (MSMg01no086_l22.g1)
ACCAG305971AG305972
length700753
length of high quality
(start - end)
557 (62 - 618)159 (130 - 288)
definitionCHROMAT_FILE: MSMg01no086_l22.b1 PHD_FILE: MSMg01no086_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:36 2005CHROMAT_FILE: MSMg01no086_l22.g1 PHD_FILE: MSMg01no086_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGGGCCGCTATACGACTCCTATAGTCCGAGGATCCGCGGAATTCAAATTG
TCTTAACAGACAGAGACACGCTGAGCAGTGAGCGCTGCACTGGGTGGAGA
ACCTGGTGCCTGAGCCAAGGTTCTAATCCCAGATGAACCATGGCGTCCTA
ACGAAGCTAAACCAGTGCTCTAGGAAAGCATGGGAGTGAGAGCGGAGAGA
ACAAATAGACATGAAAGAATGTCCTAGGAAAGACAGATGTCCACAGTAGC
TATCAAAGGGTGGTTCCAAGTCTTACATGTCCTTGCTGGTACAATTCCTT
TGAAAATCCTGAAACCATGAAATGATATAACAGAAGTTAACATCATGGAA
AATTCAAAGTAGCTCCACGTAGCTTAACTCGTGTTTCCTGGGCTTTGGCT
GTGCTGCACTTGGGAAGTAGCAGTTAGGGCTCTGGGTTCAGACAAGATTC
TGGGTTCAGTCCAGATAACAACAATGAAACCCAAAACAGTTAAGGTACAT
TCGAGAATCAATATTGTTTACATTTCCCATAGTCACCAGAATGATCTGCA
AATTTAGTGTTAATATTAATGACATTTTTCATAGAACTGGGAAAAAATCT
TAAAATTCATATATAATCATCAGAATCCTCAAATAAAGAAAACAATTTTT
GAGTTAAGACAACTAAGCATAAGACCTTAAACTGTCTGAACTCAAAATAT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGTTTTGTTTTTTGTTTTTGTTTTT
GTTTTTTCCCTATTCATAGAATTACCCCTTGGTCTGAGAAACTGATTATT
TTTTTAAAGAATTTTTAAAAATCTTCTAAATTTAAGAGATTTTTACATTT
TAAAAATGTAAAAGCTTAATTTAAAAAATATATAGGTATACATATATGTA
TATTGACAATGTTAAAATAAGGTTTAAATGGATGTTGTTTGAGTATTTAT
TCTATAAACTGCGTATTCTCCTCTTCTTTTTTTCTCTTTCCCCAGTCTTC
CTTCTCTCCTACTTTCTTTTTTTTTTTTCCCCCCCCCCCCCCTCAAGATA
TGAAAATTTTTTACTCACTCTTATTTAGCCCCCCATTAAATAATAAATCA
TCATTCTTGGGCGGTGGTGCTTCCTTTTCTCTCCCTTGTTCCCCTCCTTT
ATTTCATCCATTCCTTTATTTTTTTACCTTTTTCCCTATCTTCTTCCGTA
CTTATGCAATTATTTCCTCCTTACCTCTTTTCTATCTTCCTTCCTTTTAA
CTTTCCCATTCCCATCTTTTAATTTATATCCTTTTCTTTTCTCCCCTCAT
TTTCCTTCTCCTCGTTTCGTACTTCTCAGCGGTCCCTGATGCTGATTTTA
TATTCTCTCTTTCCTCTTTTATCCTCTCTCTTTTCTTATTTCCCCTACTT
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_l22.b1 MSMg01no086_l22.b1 CHROMAT_FILE:
MSMg01no086_l22.b1 PHD_FILE: MSMg01no086_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:36 2005
         (557 letters)



>mm_chr8_66842713_66843669
          Length = 957

 Score = 1000 bits (517), Expect = 0.0
 Identities = 544/557 (97%), Gaps = 8/557 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagacacgctgagcagtgagcgctgcactgggtggagaacctggtgcctgagccaaggt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 201 agagacacgctgagcagtgagcgctgcactgggtggagaacctggtgcctgaggtaaggt 260

                                                                       
Query: 61  tctaatcccagatgaaccatggcgtcctaacgaagctaaaccagtgctctaggaaagcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaatcccagatgaaccatggcgtcctaacgaagctaaaccagtgctctaggaaagcat 320

                                                                       
Query: 121 gggagtgagagcggagagaacaaatagacatgaaagaatgtcctaggaaagacagatgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggagtgagagcggagagaacaaatagacatgaaagaatgtcctaggaaagacagatgtc 380

                                                                       
Query: 181 cacagtagctatcaaagggtggttccaagtcttacatgtccttgctggtacaattccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 cacagtagctatcaaagggtggttccaagtcttacatgtccttgctggtacaatttcttt 440

                                                                       
Query: 241 gaaaatcctgaaaccatgaaatgatataacagaagttaacatcatggaaaattcaaagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaatcctgaaaccatgaaatgatataacagaagttaacatcatggaaaattcaaagta 500

                                                                       
Query: 301 gctccacgtagcttaactcgtgtttcctgggctttggctgtgctgcacttgggaagtagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctccacgtagcttaactcgtgtttcctgggctttggctgtgctgcacttgggaagtagc 560

                                                                       
Query: 361 agttagggctctgggttcagacaagattctgggttcagtccagataacaacaatgaaacc 420
           |||||||||||||||||||||||||||| ||       ||||||||||||||||||||||
Sbjct: 561 agttagggctctgggttcagacaagatt-tg-------tccagataacaacaatgaaacc 612

                                                                       
Query: 421 caaaacagttaaggtacattcgagaatcaatattgtttacatttcccatagtcaccagaa 480
           ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 613 caaaacagttaagatacattcgagaatcaatattctttacatttcccatagtcaccagaa 672

                                                                       
Query: 481 tgatctgcaaatttagtgttaatattaatgacatttttcatagaactgggaaaaaatctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tgatctgcaaatttagtgttaatattaatgacatttttcatagaactgggaaaaaatctt 732

                            
Query: 541 aaaattcatatataatc 557
           |||||||||||||||||
Sbjct: 733 aaaattcatatataatc 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)