BAC Information

Click to search

BAC

Clone NameMSMg01-087C14
Chromosome8 (Build37)
Map Location 17,405,404 - 17,522,197
singlet/doubletdoublet
Overlap geneCsmd1
Upstream genenone
Downstream geneLOC665638, LOC100040466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087C14.T7 (MSMg01no087_c14.b1)MSMg01-087C14.TJ (MSMg01no087_c14.g1)
ACCAG306272AG306273
length705704
length of high quality
(start - end)		286 (70 - 355)602 (72 - 673)
definitionCHROMAT_FILE: MSMg01no087_c14.b1 PHD_FILE: MSMg01no087_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:10 2005CHROMAT_FILE: MSMg01no087_c14.g1 PHD_FILE: MSMg01no087_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,405,404 - 17,405,686)(17,521,760 - 17,522,197)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTATTATTCCTTAAAATCACCACGGCAGTAGTGTGACCGCTTCCATA
GCCAAATCCACTAAGGACGTGCTCTCTGATTTCCATAACAATTTAAATCA
GATTTTAAAATTTTGGACGCAAAGAAATATAGCAATATCACATGGGCAAT
GTCATGAAACAGCATGGTTTTAATTAGGTTTAACATGTCCTGAATTGACA
GAGTCCACCTGGAAAAGGTAGGTTAAACATGAATAGCCGAGGAAAGAGAA
CACATTGTTAGTTGGATAATTAATTAATTTTTCATTGACATATTAGAAGA
TGGGGACTTAACACTAATCAACAGATAAACAGGAGGTGATGCCTGTGGCA
TTGACACTTGCCCTCCTCAACACCACCCTGAACCTCTTCGATCCCAAGGT
GTCCCTGCCCTTGATTTCCTGGGCTGGCACAGCAGTAAATCAAGGGCAGT
AGTCTATGGCCCCTTACCGCTTGCATTTCGTGAGTAGCGTAGCTCTAGTT
TGCGATTCCTCCCGTTAACACACAGAGAGACAGCCGATTGTGTCGCCCCC
CGTTCCACCAATAATTGTCCGCTTAATTCCCCTACCATTCCCTTCTTTAC
CCCACCCCCTCCCCCCCCCTTTCTTTCATCTCTTGCCGTGTACTTACTCA
TACCC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACCCTAGTTCTCAAGGGTTCTACTTTGGT
GAAAACAGCTGTATGTGAAAGCTCTCTGTATGCACCAGGAAGCCTCTGAG
ACAGGCTTTGCAGACACATCCAGGGCTCATCCTTCAGTGTGTAGCTTGAG
AAAACATTAGACTCTCTAATACTTCCCTTCATTATTTCTGCAAGTGGCTA
TGGACAGCTGAATCAACAGCTTAAAGGTTGCACAGTAAAGCATATATATT
CAAAAGGTCCTGGGGAGGTGGCTTAGTCAGTAGTACCTACTGCACAAACA
TTAGAACCTGAGTTTGATCTTCTGCTCACACTTAAAAAAAACAGGTATAT
TGGTGTCAGGCCTGCAATCCCAGCTTCAAAAGGGTTTGAAAGCAAAGACA
GGAGGATTCCTGGGACTTAATGGTCACCAGTTCTAGATGAACTAGTGAGC
ACTATGTTCATTGAGAGATCTTGTTTCAAAAAGTAAGGTAGAGGGCAAAT
GGATAATGTACATAACATTGATTTCTGGCCTTTACATGAATGCTCACACA
TATGCACATGTATATGTAAATATATGCATATATACACACACATATATATA
TACCTATATATGTATATATATATACATATACATATACACATACCCAAACA
TAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_c14.b1 MSMg01no087_c14.b1 CHROMAT_FILE:
MSMg01no087_c14.b1 PHD_FILE: MSMg01no087_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:10 2005
         (286 letters)



>mm_chr8_17405204_17405889
          Length = 686

 Score =  516 bits (267), Expect = e-151
 Identities = 279/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaccacggcagtagtgtgaccgcttccatagccaaatccactaaggacgtgctctctga 60
           |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tcaccacggcagtactgtgaccgcttccatagccaaatccactaaggaagtgctctctga 260

                                                                       
Query: 61  tttccataacaatttaaatcagattttaaaattttggacgcaaagaaatatagcaatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttccataacaatttaaatcagattttaaaattttggacgcaaagaaatatagcaatatc 320

                                                                       
Query: 121 acatgggcaatgtcatgaaacagcatggttttaattaggtttaacatgtcctgaattgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatgggcaatgtcatgaaacagcatggttttaattaggtttaacatgtcctgaattgac 380

                                                                       
Query: 181 agagtccacctggaaaaggtaggttaaacatgaatagccgaggaaagagaacacattgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagtccacctggaaaaggtaggttaaacatgaatagccgaggaaagagaacacattgtt 440

                                                      
Query: 241 agttggataattaattaatttttcattgacatattagaagatg 283
           ||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 441 agttggagaattaattaattttgcattgacatattagaagatg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no087_c14.g1 MSMg01no087_c14.g1 CHROMAT_FILE:
MSMg01no087_c14.g1 PHD_FILE: MSMg01no087_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:10 2005
         (602 letters)



>mm_chr8_17521760_17522761
          Length = 1002

 Score =  824 bits (426), Expect = 0.0
 Identities = 435/438 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accctagttctcaagggttctactttggtgaaaacagctgtatgtgaaagctctctgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 accctagttctcaagggttctactttggtgaaaacagctgtatgtgaaagctctctgtat 379

                                                                       
Query: 61  gcaccaggaagcctctgagacaggctttgcagacacatccagggctcatccttcagtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gcaccaggaagcctctgagacaggctttgcagacacatccagggctcatccttcagtgtg 319

                                                                       
Query: 121 tagcttgagaaaacattagactctctaatacttcccttcattatttctgcaagtggctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tagcttgagaaaacattagactctctaatacttcccttcattatttctgcaagtggctat 259

                                                                       
Query: 181 ggacagctgaatcaacagcttaaaggttgcacagtaaagcatatatattcaaaaggtcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggacagctgaatcaacagcttaaaggttgcacagtaaagcatatatattcaaaaggtcct 199

                                                                       
Query: 241 ggggaggtggcttagtcagtagtacctactgcacaaacattagaacctgagtttgatctt 300
           ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 198 ggggaggtggcttagtcaggagtacctactgcacacacattagaacctgagtttgatctt 139

                                                                       
Query: 301 ctgctcacacttaaaaaaaacaggtatattggtgtcaggcctgcaatcccagcttcaaaa 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 138 ctgctcacacttaaaaaaaacaggtatattggtgtcatgcctgcaatcccagcttcaaaa 79

                                                                       
Query: 361 gggtttgaaagcaaagacaggaggattcctgggacttaatggtcaccagttctagatgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  gggtttgaaagcaaagacaggaggattcctgggacttaatggtcaccagttctagatgaa 19

                             
Query: 421 ctagtgagcactatgttc 438
           ||||||||||||||||||
Sbjct: 18  ctagtgagcactatgttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |