Query= MSMg01no087_c21.b1 MSMg01no087_c21.b1 CHROMAT_FILE:
MSMg01no087_c21.b1 PHD_FILE: MSMg01no087_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:12 2005
(289 letters)
>mm_chr8_24412675_24413363
Length = 689
Score = 543 bits (281), Expect = e-159
Identities = 287/289 (99%)
Strand = Plus / Plus
Query: 1 catcaactgtcccacatttaatccagtttctttagcttgggtaattaatagggcctttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcaactgtcccacatttaatccagtttctttagcttgggtaattaatagggcctttat 260
Query: 61 gttttagtgtccaaggaagaaaccagaattgaaatgctcttatgggacgtgtgttagaag 120
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 261 gttttagtgtccaaggaagaaaccagaaatgaaatgctcttataggacgtgtgttagaag 320
Query: 121 tgggtggtgtcagctttatagagctgtgataattcccaaggcaatcaacttaaaggggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggtggtgtcagctttatagagctgtgataattcccaaggcaatcaacttaaaggggag 380
Query: 181 aaagaaagttccctacacaaagaatgctagtcagtagtggtgaagcttctagttggatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagaaagttccctacacaaagaatgctagtcagtagtggtgaagcttctagttggatac 440
Query: 241 cagctccatttctccctgccgaatgacatataaaaagagtgcattcacc 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagctccatttctccctgccgaatgacatataaaaagagtgcattcacc 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no087_c21.g1 MSMg01no087_c21.g1 CHROMAT_FILE:
MSMg01no087_c21.g1 PHD_FILE: MSMg01no087_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:12 2005
(250 letters)
>mm_chr8_24550510_24551159
Length = 650
Score = 321 bits (166), Expect = 2e-92
Identities = 240/276 (86%), Gaps = 32/276 (11%)
Strand = Plus / Minus
Query: 1 ctggaatgtctgagaagagcaacaaccagtgagcatcactagccaaacatactagatggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctggaatgtctgagaagagcaacaaccagtgagcatcactagccaaacatactagatggg 255
Query: 61 gtgcacacagcactctgcttcctcctgaagtgaactgaaaattagttaaaaagaaaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtgcacacagcactctgcttcctcctgaagtgaactgaaaattagttaaaaagaaaagaa 195
Query: 121 aagaaaag---ag-aaag-aaag--aaggaaagaaagag---ag---ag---ag---ag- 160
|||||||| || |||| |||| ||| ||||||| || || || || ||
Sbjct: 194 aagaaaagaaaagaaaagaaaagaaaagaaaagaaa-agaaaagaaaagaaaagaaaaga 136
Query: 161 --ag---agagagag---agagacagagagag-agaaagaaagaaagaaagaaagaaaga 211
|| ||||| || ||| | ||||| || |||||||||||||||||||||||||||
Sbjct: 135 aaagaaaagaga-agaaaaga-aaagagaaagaagaaagaaagaaagaaagaaagaaaga 78
Query: 212 aagaaagaaagaaagaaagaaagacagaaagaaaga 247
|||||||||||||||||||||||| |||||||||||
Sbjct: 77 aagaaagaaagaaagaaagaaagaaagaaagaaaga 42
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space: 154481
Effective search space used: 154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
