BAC Information

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BAC

Clone NameMSMg01-087I18
Chromosome8 (Build37)
Map Location 92,529,432 - 92,705,575
singlet/doubletdoublet
Overlap genenone
Upstream geneSall1, LOC100041089, EG625801, EG384862
Downstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087I18.T7 (MSMg01no087_i18.b1)MSMg01-087I18.TJ (MSMg01no087_i18.g1)
ACCAG306545AG306546
length720714
length of high quality
(start - end)
128 (182 - 309)167 (114 - 280)
definitionCHROMAT_FILE: MSMg01no087_i18.b1 PHD_FILE: MSMg01no087_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:43 2005CHROMAT_FILE: MSMg01no087_i18.g1 PHD_FILE: MSMg01no087_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,705,448 - 92,705,575)(92,529,432 - 92,529,598)
sequence
ATATTTGCGGCGCTATACGATCACTTTCAAAAGAGGATCCGCGGAATTCC
TTGTTCCCATGAATCTGCTTTCCCTCTACCCATGTCCCACAGGGTACTTA
TTAGTTTCTGGTTTCCAAAGAATTTGAACATGTCAGGCTATGGTGTAAAC
CACCCTTTCCCCTTTAAAATAGTTGAGGATGCTTAACAGTCTTCTACCTC
GTTAAATCACTTTTCTTTCTTGCAGCCTGAGATCCCACAGAAGCATATCC
ATCCAGACCTGCCATCCTTAGCGCCATCCCTCTTTGCTTGATTTAATTAT
TGAAACATCTGTTATAAAGCCCTTGCATTTACAAATGAGACTATTTACAA
TTTATGATAGTAGGCTTCGCACATAGTCTCCAAAGATAGATTCTCTTTAT
TTTCAACGAACAATCATCACTACGTCATGTCACAGAATAATTCTTCAAAC
ATGAGAGGGCGAACGAGGGAGGTAACTTCTTTTATATCCTCCACTATTTT
TCTTCATTTTTCAATTTTCTATTTACATAACCCCTCTTAACCCCATACTC
CTTCTCTCACTATTATCCCTCTTCCCCTCCCCTTATTCTACCCTTTTTTC
CACATCCCCCTCCCCCTATTATATTACCCCCTCTTTACTCCCCTCCCTTC
TTCCTATTTCCCCCTCCCTCCCCCTCACTCCTTTATTTCCTTCTTTGTAC
CTCCCTACCCACATATCTCA
GCATGTGGTAGGCCTGGTGGTCGCCTTTCAGACAAGTGTAGGTGAACTAT
AGAATTCCCCGCGCAATTCCCCATTGTCTTTAGCTTCCCAACAGAAAACA
GGATGGCTAGAAAGGCATCCTTATACATTCTTCATTAAACGACATTCTCT
CCCCGACAATCCCGTTGGATCCATACTCTTCCCCCAGCCATGTCTACGAT
GGTTCCCTAGACCTCCCTGAATTCCTAGAGTACTCTGCTTATCTCATTTG
TTTGCGGGAAGAGCAGTCCAGCCACCACGGTGGTCATCTAGTCCCCCACC
AACCTTCTTTCTGTTCATCATTATGACAGCCTGACTTAACTAGTTCTTTG
CATCCTTGATTTCTGCTTCCTTCCTCAAGATGGTCGCTCCTTAGACTAGG
AATTAGACTGGTCTTGATGATTACCATGTACTCCGCTCCTAGAAGATTTG
TTCAGTGCCTACTCCCAGCCTGTTCCACATCTACTTCAGATGGAATGCGT
CATCCCTCGACGGTCTTTCCTGGTCGCGCTTGACCTCTCCGCCCATTTGC
CTCCTCTTTTATTTGCCCATTTATCCCATCTTTACCGACCACGTGACTTG
TTTTCTGCCACTGGCTCCCCTGTGTTCCATCCCCCCTCGGGTCTTATTTC
TCTATTTTTTTTCCAACCCCCACCGCCGCGCTTGCACTTTTCTATTCTTC
CCCCTTTCGCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_i18.b1 MSMg01no087_i18.b1 CHROMAT_FILE:
MSMg01no087_i18.b1 PHD_FILE: MSMg01no087_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:43 2005
         (128 letters)



>mm_chr8_92705248_92705775
          Length = 528

 Score =  248 bits (128), Expect = 1e-70
 Identities = 128/128 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaacagtcttctacctcgttaaatcacttttctttcttgcagcctgagatcccacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cttaacagtcttctacctcgttaaatcacttttctttcttgcagcctgagatcccacaga 269

                                                                       
Query: 61  agcatatccatccagacctgccatccttagcgccatccctctttgcttgatttaattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agcatatccatccagacctgccatccttagcgccatccctctttgcttgatttaattatt 209

                   
Query: 121 gaaacatc 128
           ||||||||
Sbjct: 208 gaaacatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 528
Length adjustment: 8
Effective length of query: 120
Effective length of database: 520
Effective search space:    62400
Effective search space used:    62400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no087_i18.g1 MSMg01no087_i18.g1 CHROMAT_FILE:
MSMg01no087_i18.g1 PHD_FILE: MSMg01no087_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:43 2005
         (167 letters)



>mm_chr8_92529232_92529798
          Length = 567

 Score =  315 bits (163), Expect = 7e-91
 Identities = 166/167 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcatccttatacattcttcattaaacgacattctctccccgacaatcccgttggatcca 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ggcatccttatacattcttcattaaacgacattctctccccgacaaccccgttggatcca 260

                                                                       
Query: 61  tactcttcccccagccatgtctacgatggttccctagacctccctgaattcctagagtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactcttcccccagccatgtctacgatggttccctagacctccctgaattcctagagtac 320

                                                          
Query: 121 tctgcttatctcatttgtttgcgggaagagcagtccagccaccacgg 167
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgcttatctcatttgtttgcgggaagagcagtccagccaccacgg 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)