Query= MSMg01no088_f03.b1 MSMg01no088_f03.b1 CHROMAT_FILE:
MSMg01no088_f03.b1 PHD_FILE: MSMg01no088_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:45 2005
(104 letters)
>mm_chr8_60809438_60809941
Length = 504
Score = 194 bits (100), Expect = 2e-54
Identities = 103/104 (99%)
Strand = Plus / Plus
Query: 1 gcatgatgaattgagtttggctcttcattaccagaaggtaatgagaaagctaagtgtata 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcatgatgaactgagtttggctcttcattaccagaaggtaatgagaaagctaagtgtata 260
Query: 61 cataataccaacactgggaaagtgaagacatatagattctcaga 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataataccaacactgggaaagtgaagacatatagattctcaga 304
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 104
Length of database: 504
Length adjustment: 8
Effective length of query: 96
Effective length of database: 496
Effective search space: 47616
Effective search space used: 47616
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
| Query= MSMg01no088_f03.g1 MSMg01no088_f03.g1 CHROMAT_FILE:
MSMg01no088_f03.g1 PHD_FILE: MSMg01no088_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:45 2005
(561 letters)
>mm_chr8_60983600_60984561
Length = 962
Score = 1017 bits (526), Expect = 0.0
Identities = 553/562 (98%), Gaps = 1/562 (0%)
Strand = Plus / Minus
Query: 1 aagactagcttcaaggctatatctaggaattctatcttaataagtaatttagaaagagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aagactagcttcaaggctatatctaggaattctatcttaataagtaatttagaaagagag 703
Query: 61 cacaagaggtactcaacagtcaacaggtgcctgaaatgtcatggtttagtgggctgaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 cacaagaggtactcaacagtcaacaggtgcctgaaatgtcatggtttagtgggctgaaat 643
Query: 121 aaacagtgcaaaggaagctaaggattcaggttcttttgtgtcgttatatccaagagatga 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aaacagtgcaaaggaagctaatgattcaggttcttttgtgtcgttatatccaagagatga 583
Query: 181 tttcattt-aaaaaaaaatcagaatataaagccatgtttctttagtcaggagtaagactg 239
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 582 tttcatttaaaaaaaaaatcagaatatacagccatgtttctttagtcaggagtaagactg 523
Query: 240 gacttctttttcttagccagaaatgatagtatcatttatttttatgtcagaacaaaggtg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gacttctttttcttagccagaaatgatagtatcatttatttttatgtcagaacaaaggtg 463
Query: 300 taacctaaaaggcctttcaattgtcatattgaccttcaagaacagtagccagaaataaaa 359
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 462 taacctaaaaggcctttcaattgtcatattgtccttcaagaacagtagccagaaataaaa 403
Query: 360 tggagactttttcaattttgtaatgagtaaaatcaagacaacttgatgtgtaaactacag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 402 tggagactttttcaattttgtaatgagtaaaatcaagacaacttgatgtgtaaactagag 343
Query: 420 atgaggttatttcctcttggaggaaatgagaacaatcaggctataggattttactggatt 479
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atgagtttatttcctcttggaggaaatgagaacaatcaggctataggattttactggatt 283
Query: 480 agatttattaaaataaataagtcatgctgactaccaagttaaatctttatttcttctttc 539
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agatttattaaaataaataattcatgctgactaccaagttaaatctttatttcttctttc 223
Query: 540 tctgcccaggggcgagtgaaga 561
|||||||||||| || ||||||
Sbjct: 222 tctgcccaggggtgattgaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 962
Length adjustment: 10
Effective length of query: 551
Effective length of database: 952
Effective search space: 524552
Effective search space used: 524552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
