BAC Information

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BAC

Clone NameMSMg01-088F04
Chromosome8 (Build37)
Map Location 28,921,016 - 28,921,434
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp703, Erlin2, Prosc, Gpr124, Brf2, Rab11fip1, Got1l1, Adrb3, Eif4ebp1, LOC732482, Tex24, Chrnb3, Chrna6, 4921537P18Rik, Gm1698
Downstream geneEG666422, LOC666430, EG666446, LOC100042598, Unc5d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088F04.T7 (MSMg01no088_f04.b1)MSMg01-088F04.TJ (MSMg01no088_f04.g1)
ACCAG307112AG307113
length723675
length of high quality
(start - end)
442 (48 - 489)288 (58 - 345)
definitionCHROMAT_FILE: MSMg01no088_f04.b1 PHD_FILE: MSMg01no088_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:45 2005CHROMAT_FILE: MSMg01no088_f04.g1 PHD_FILE: MSMg01no088_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTCTCAACTGAGTTGCCCATGTTTGAGTGGATGGCCCTATAA
CCATGGACATAGTGGCGTAAGTAATGGACTCTGAGTAAAAAGAAGAGTAC
AGAAAGATGGGAGGGGATGTAATGGAGGATTGGAAGAAGTAAAGAGGAGA
GACTAAGTTGGATCAAAACTCATGGGCTATACATATGAAATTCTCAAAGA
ATATCATATAATGCATACATACATACATACATACATACATACATACATAC
ATACATACATACATATGATTCAGCCAGTGATCCCATATAGATCCTGGACT
TTTCCTTGTTGCAAAACTTTTTTGTGTGTTTTAAGAATTCTATAAATGCA
TATAATGTTTTAATCAAATCTATTCCTTCTCTAATTCCTCTCTTGTATGC
CCCTACCAGTTTTTCTCCCAAATTTAATTTGCTTTTCTAAAGAAACAGAA
GTATAAGAAGGAGGAGGAGGAGGAACATTAGGTGTTGTAGGATTACCAAT
ATTATTATTAATATTTCTTTTCTCTTCTCTCCCCCTTTTCCTCTCTCTTT
CTCCTCCCCCCCCTTTTATTTTATTCCCGTTTTTTCTCCCCCTTTTTTCT
CTTCCTCCTTCTTTTTCCCCCCCTTTTTTTCTTTCCTTTCTTTTCTTCCC
TTTATCTCTTTCTCCTCTCCTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCACCTGAGGAATACCAAATGGCTTAGAAGCACCTGAAAAAAT
GTTCACCCATCCTTAATCATCAGTGAAATGCAAATCAAAACAACCCTGAG
ATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT
CACAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTTCTGG
GCATATATCCAGAACATGCCCTAACTGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTCACTTATAATAGCCAGAAGCTGGAAAGAACCCAT
ATGTCTCCTTTTCAGAGGAATGCATACAGAAAATGTGGTACATTTACACA
ATTCAGCACTACTCAGCTATTAAAAAGAATGAATTCTATGAAATTCCTAT
CCCCATGCATGGACCTGTAGGGCATCTTCCTGACTGTAGTAACACATTCC
CCAAGGAACTCATCCATTACGTTTTCCCTGACAATTGGATATTATCCCTA
AACCCTTTGATACTCTTCACTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_f04.b1 MSMg01no088_f04.b1 CHROMAT_FILE:
MSMg01no088_f04.b1 PHD_FILE: MSMg01no088_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:45 2005
         (442 letters)



>mm_chr8_28920810_28921651
          Length = 842

 Score =  719 bits (372), Expect = 0.0
 Identities = 414/438 (94%), Gaps = 19/438 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtctcaactgagttgcccatgtttgagtggatggccctataaccatggacata 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcagtctcaagtgagttgcccatgtttgagtggatggccctataaccatggacata 266

                                                                       
Query: 65  gtggcgtaagtaatggactctgagtaaaaagaagagtacagaaagatgggaggggatgta 124
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtggcgtaagtaatggact--gagtaaaaagaagagtacagaaagatgggaggggatgta 324

                                                                       
Query: 125 atggaggattggaagaagtaaagaggagagactaagttggatcaaaactcatgggctata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggaggattggaagaagtaaagaggagagactaagttggatcaaaactcatgggctata 384

                                                                       
Query: 185 catatgaaattctcaaagaatatcatataatgcatacatacatacatacatacatacata 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 catatgaaattctcaaagaatatcatataatgcatacatacacacatacatacatacata 444

                                                                       
Query: 245 catacatacatacatacatacatatgattcagccagtgatcccatatagatcctggactt 304
            |               |||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 445 -a---------------atacatatgattcagc-agtgatcccatataaatcctggactt 487

                                                                       
Query: 305 ttccttgttgcaaaacttttttgtgtgttttaagaattctataaatgcatataatgtttt 364
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 488 ttccttgttgcaaaacttttttgtttgttttaagaattctataaatgcatataatgtttt 547

                                                                       
Query: 365 aatcaaatctattccttctctaattcctctcttgtatgcccctaccagtttttctcccaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aatcaaatctattccttctctaattcctctcttgtatgcccctaccagtttttctcccaa 607

                             
Query: 425 atttaatttgcttttcta 442
           |||||||||| |||||||
Sbjct: 608 atttaatttgtttttcta 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)