Query= MSMg01no088_n12.b1 MSMg01no088_n12.b1 CHROMAT_FILE:
MSMg01no088_n12.b1 PHD_FILE: MSMg01no088_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:27 2005
(478 letters)
>mm_chr8_105897352_105898229
Length = 878
Score = 880 bits (455), Expect = 0.0
Identities = 470/475 (98%), Gaps = 2/475 (0%)
Strand = Plus / Plus
Query: 5 gaattccacagaacaccgcc-caaatctgcattaggatcagagaggggagccttgctatg 63
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacagaacaa-gccacaaatctgcattaggatcagagaggggagccttgctatg 263
Query: 64 tgcttttaaaaatcaaatgatggctagccttctctgtgcccaggtaaacatattcctcag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgcttttaaaaatcaaatgatggctagccttctctgtgcccaggtaaacatattcctcag 323
Query: 124 gcatcagccaactgaccaaaccgtataggatctgaatagcttgctcccgtggatgtgggg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcatcagccaactgaccaaaccgtataggatctgaatagcttgctcccgtggatgtgggg 383
Query: 184 attctgatgagccacaaagccaggctgtactgcacaggtgcctgaaagtatccagggctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attctgatgagccacaaagccaggctgtactgcacaggtgcctgaaagtatccagggctc 443
Query: 244 ggagctgaaattccagtcatgtcagaccctgtctgtgacctgtcttggattctactgacc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggagctgaaattccagtcatgtcagaccctgtctgtgacctgtcttggattctactgacc 503
Query: 304 acagcttttaaggtgctgggcaatttcacactactttctgcccacatgttatctcctacc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acagcttttaaggtgctgggcaatttcacactactttctgcccacatgttatctcctacc 563
Query: 364 atttctattccattcttccttaaattcccagcttaagagagcaaggctgtctgttttcct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atttctattccattcttccttaaattcccagcttaagagagcaaggctgtctgttttcct 623
Query: 424 cctctgtcctctatataaccctcacgattctgaatttgctgtcctctcagccccg 478
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 624 cctccgtcctctatataaccctcaggattctgaatttgctgtcctctcagccccg 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_n12.g1 MSMg01no088_n12.g1 CHROMAT_FILE:
MSMg01no088_n12.g1 PHD_FILE: MSMg01no088_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:27 2005
(486 letters)
>mm_chr8_106005736_106006621
Length = 886
Score = 924 bits (478), Expect = 0.0
Identities = 484/486 (99%)
Strand = Plus / Minus
Query: 1 ttcttgttccctgcctgtgacacttgacacggcttgcgacatatggaaatcagcttctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ttcttgttccctgcctgtgacacttgacacggcttgcgacatatggaaatcagcttctgc 531
Query: 61 ctgcctgcagaaatagttttcagttttcaggcccagccagtgttggaatgcagacaggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ctgcctgcagaaatagttttcagttttcaggcccagccagtgttggaatgcagacaggtc 471
Query: 121 tctctctctggccctggagagtaggctgtgttcacaacaaagctctcaagtaacttgtca 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tctctctccggccctggagagtaggctgtgttcacaacaaagctctcaagtaacttgtca 411
Query: 181 aaatcaggaaagggaggagagtaaaggaccacctggggcttgtggcctaaggaagcagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aaatcaggaaagggaggagagtaaaggaccacctggggcttgtggcctaaggaagcagag 351
Query: 241 aatccacacaaggtgcatgctgggggaagatggagtctgctaccctttcagcctttccat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aatccacacaaggtgcatgctgggggaagatggagtctgctaccctttcagcctttccat 291
Query: 301 tactgcctgcaggacgcctcactaattagactgcctccctgcggcctgccacattcattt 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 290 tactgcctgcaggacgcctcactaattagactgcctccctgtggcctgccacattcattt 231
Query: 361 gatctatctgttctgcctgggcaaaatttaagctgcatgaccttggactagtgacctacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gatctatctgttctgcctgggcaaaatttaagctgcatgaccttggactagtgacctacc 171
Query: 421 tctctgaaccaaatggcatcacctgctaaaagggagagggtgggggccagaataagatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tctctgaaccaaatggcatcacctgctaaaagggagagggtgggggccagaataagatct 111
Query: 481 tttgag 486
||||||
Sbjct: 110 tttgag 105
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
