BAC Information

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BAC

Clone NameMSMg01-089F12
Chromosome8 (Build37)
Map Location 31,410,564 - 31,410,974
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628189
Downstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089F12.T7 (MSMg01no089_f12.b1)MSMg01-089F12.TJ (MSMg01no089_f12.g1)
ACCAG307869AG307870
length676682
length of high quality
(start - end)
318 (35 - 352)449 (76 - 524)
definitionCHROMAT_FILE: MSMg01no089_f12.b1 PHD_FILE: MSMg01no089_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:07 2005CHROMAT_FILE: MSMg01no089_f12.g1 PHD_FILE: MSMg01no089_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTT
CAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCA
CCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTA
GGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATT
GACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATT
TGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAAT
TTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTAT
ATGTTTCAGCGCCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATT
TGACCTTAGTACAAGGACTTAAGTATGGATCGATTTGCATTCTTCTAAAT
GATAACAACCAGTTGGCCAGCACCAATTGTTGAATATGCTGTCTTTCTTC
CACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTG
TGGGTTCATTTCTGGGTCTTCAATTCTATTCCTTTGGTCTACTTGTCTGT
CTCTATACCAGTACCATGCAGTTTTTTACCACATTTGCTCTGTTATAAAG
CTTTTAAGTCAGGCTTGGTGATTCCT
NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAATGAAGGAGTGACGGTAGATTT
GAAGCACAATGTATAAGGAGAGGGCCTTAAGAGAAAGCCCTCACTGTAAA
AATCAGCAGAAGCCTAAACCACTACTGATACTAGCCAACACCAGCTAAGT
GGGAGACAAGTAGACTCTTCCTTACCCATAAGTAAGGTGCTTTACAGCTT
ATTCAGCAAGTTAAACTGTTTCCATTCAACTTTTCTTTTTTTTTTTCATT
TTTTATTAGGTATTTAGCTCATTTTCATTTCCAATGCTATACCAAAAGTC
CCCCATACCCACCCATCCCCACTCCTCTACCCAACCACTCCCCCTTTTTG
GCCCTAGCGTTCCCCTGTACTAGGGCATATAAAGTTTGCAAATCCATGGG
CCTCTCTTTGCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAG
CTAGAGACAAGAGCTCCCGGGTACTGCTTAGTTCATATTGTTGTTCCCCC
TATAGGGTTGCAGTTCCCTTAAGTTCCTTGGGTGCTTTCTCCAGTTCCTT
CATTGGGGGCCATGTGGTCCATTCCAAACCTGGACGTGAGCATCCACTTC
TGTGTTTGCTAGGCCCCGTGAAAGTCTTACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_f12.g1 MSMg01no089_f12.g1 CHROMAT_FILE:
MSMg01no089_f12.g1 PHD_FILE: MSMg01no089_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:07 2005
         (449 letters)



>mm_chr8_31410564_31411412
          Length = 849

 Score =  774 bits (400), Expect = 0.0
 Identities = 409/412 (99%), Gaps = 1/412 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatgaaggagtgacggtagatttgaagcacaatgtataaggagagggccttaagagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 411 agaatgaaggagtgacggtagatttgaagcacaatgtataaggagaggggcttaagagaa 352

                                                                       
Query: 61  agccctcactgtaaaaatcagcagaagcctaaaccactactgatactagccaacaccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agccctcactgtaaaaatcagcagaagcctaaaccactactgatactagccaacaccagc 292

                                                                       
Query: 121 taagtgggagacaagtagactcttccttacccataagtaaggtgctttacagcttattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 taagtgggagacaagtagactcttccttacccataagtaaggtgctttacagcttattca 232

                                                                       
Query: 181 gcaagttaaactgtttccattcaacttttctttttttttttcattttttattaggtattt 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 231 gcaagttaaactgtttccattcaacttttc-ttttttttttcattttttattaggtattt 173

                                                                       
Query: 241 agctcattttcatttccaatgctataccaaaagtcccccatacccacccatccccactcc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 172 agctcattttcatttccaatgctataccaaaagtcccccatacccacccacccccactcc 113

                                                                       
Query: 301 tctacccaaccactccccctttttggccctagcgttcccctgtactagggcatataaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tctacccaaccactccccctttttggccctagcgttcccctgtactagggcatataaagt 53

                                                               
Query: 361 ttgcaaatccatgggcctctctttgcagtgatggccgactaggccatctttt 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  ttgcaaatccatgggcctctctttgcagtgatggccgactaggccatctttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)