BAC Information

Click to search

BAC

Clone NameMSMg01-089H01
Chromosome8 (Build37)
Map Location 80,736,863 - 80,737,171
singlet/doubletsinglet
Overlap genenone
Upstream geneNr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra, EG622803
Downstream geneTtc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466, Lsm6, EG666340, EG666346, D630040G17Rik, 1700011L22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089H01.T7 (MSMg01no089_h01.b1)MSMg01-089H01.TJ (MSMg01no089_h01.g1)
ACCAG307938AG307939
length693710
length of high quality
(start - end)
315 (36 - 350)286 (73 - 358)
definitionCHROMAT_FILE: MSMg01no089_h01.b1 PHD_FILE: MSMg01no089_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:14 2005CHROMAT_FILE: MSMg01no089_h01.g1 PHD_FILE: MSMg01no089_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGAG
AACAGATGAGGCTCTCCTGGTGTAGACAAGAGATGGTGTTGGCTATAGGT
AGTCACAATAATCAATTGCATATTCACAAGGAATAATTGAATGCATGGAA
ATACTGAAAAAAGGAAACAACTCAGGGGCATTCAGAAGGCGCTTGGATTG
TGGGAATTTCTCTGGCGGGTTCACTGGAGGAACCAGATCCTCTTGCAGGC
CACGCCCACTCACTAACAGGCCCACTCTCCAAGCACCGCCCCCACACTTG
AAGAGTCTTGGAGCTGACCAATCCTAAAGCCCATTTTAGCCTAACTACTT
TTTTATCTGGCCGCCCGAGCCCCTCTGTTTCCATGGAGACGCTTTCAGCG
TCCCCTGTCTGCAACAAGCCAGGCCAACAATCTGGGATGAGAGTACCTCA
CCCAGCACCCATCGCCTGCATAAGCTTAGTCAGGGACACAGAATCACAGT
CCCAGAGCTAGTTTTCTAAGGTTTGTGGGGCAAGGCTGGGGACAGGACCT
GGTCCGCTCCCAGAAGAGTGGGCGGCTCCTCCTTTCCAAGAACCCCTTCT
TGCATTACTTGCGTCCCAGCTTGCGAAAACAGGAGAGAAAAGGCCCTCTC
CCTCCCCCCCCCACATCACTCCCCTTCTCACAATGCGCTTTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTAAGATTAACAAACCTCAGGACATAC
AGAACTTAACAGCGGATGTGGTCAGCATGACCCTGCTCTAAGTCAAATTA
TTTCTCTGTGTCAGTGACTGGTAGGTATGTTACAGCATTAATATAAAATA
GCTGGCACGCATGAAACAAAACGGCTATGACTATGCTGCAGGGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCGGCCACAGCAGTCTATGTC
TATCCCAAGAGACTACCATTCTACTGAAGACAGGAATTTGTTCCCAACAC
ACCAGCCCTAGATGCTTCTGGTGGACTTTCTGACCAGTCTGAGCCCTTGA
GTCCTACACTGCTTCAAGTTTGCTTGTACTTTCCTACTCTCAGGCCTCAT
GTAATCTGACCACTGGCTGAAACATACGCCCTCTAGCCTGTTCTCGTTAT
CATTTCCGCCTCTCCGTATCCCTCCCATGGCGTATTCTCCCCGCTTTCTC
TACTTAGAACTCTTTCCCTTAGCGCTTGTATTTCCCTTTTATTTTCCACT
CACCCCCCGCTACCCCTTATCCCCCATTCCCCCCCTCACCCCCCCTCTCT
TTAACATGGGTGTCCCTTTCAGTCACCTTTACACCCCCTACCCTAATTCC
AACCCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_h01.b1 MSMg01no089_h01.b1 CHROMAT_FILE:
MSMg01no089_h01.b1 PHD_FILE: MSMg01no089_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:14 2005
         (315 letters)



>mm_chr8_80736659_80737373
          Length = 715

 Score =  567 bits (293), Expect = e-166
 Identities = 305/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgagaacagatgaggctctcctggtgtagacaagagatggtgttggctatagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattcctgagaacagatgaggctctcctggtgtagacaagagatggtgctggctatagg 264

                                                                       
Query: 65  tagtcacaataatcaattgcatattcacaaggaataattgaatgcatggaaatactgaaa 124
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 tagtcacaataatcaattgcatattcacaagaaataattgaatgcatggaaatactgaaa 324

                                                                       
Query: 125 aaaggaaacaactcaggggcattcagaaggcgcttggattgtgggaatttctctggcggg 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 aaaggaaacaactcaggggcattcagaaggcccttggattgtgggaatttctctggcggg 384

                                                                       
Query: 185 ttcactggaggaaccagatcctcttgcaggccacgcccactcactaacaggcccactctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcactggaggaaccagatcctcttgcaggccacgcccactcactaacaggcccactctc 444

                                                                       
Query: 245 caagcaccgcccccacacttgaagagtcttggagctgaccaatcctaaagcccattttag 304
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caagcaccgccccctcacttgaagagtcttggagctgaccaatcctaaagcccattttag 504

                    
Query: 305 cctaactac 313
           |||||||||
Sbjct: 505 cctaactac 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)