BAC Information

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BAC

Clone NameMSMg01-089H06
Chromosome8 (Build37)
Map Location 126,773,920 - 126,774,199
singlet/doubletsinglet
Overlap geneGalnt2
Upstream gene1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535
Downstream genePgbd5, Cog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089H06.T7 (MSMg01no089_h06.b1)MSMg01-089H06.TJ (MSMg01no089_h06.g1)
ACCAG307948AG307949
length674704
length of high quality
(start - end)
303 (35 - 337)279 (85 - 363)
definitionCHROMAT_FILE: MSMg01no089_h06.b1 PHD_FILE: MSMg01no089_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:15 2005CHROMAT_FILE: MSMg01no089_h06.g1 PHD_FILE: MSMg01no089_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGAGATCCGCGGAATTCTCTGTATAGTCCCGGTGGCTTTAAACTTCTAAT
CCTCCTGCCTCAGCTTCCTGGAGTAGCTGGGTATAATATCAGGCACACTC
AACTTTACCTTTGTGTGTGTGTGTGTGTGTGTGTGTTTTCAAGACAGGGT
TTCTCTGTGTAGCCCTGGCTGTTCTGGAACTCACTCTGTAGACCAGGCTG
GCCTCGAAATCAGAAATCCACCTACCTCTGCCTCCCAGTGCTCAGATTAA
AGGCATGTGCCACCACTGCCCCGCTTTTTTTTTTTTTTTTTTTTTAGTTA
CATATATGAGTGTTTTTCCTGGATGTTTGTTTAACCCGTGCATGCCTGGT
ACACACAAAGGCCAGAGAGATAGGAGTTAACACAAATTGCAAGCTATCAT
ATGGGTGATGGGATTCACGTACATACTCATGATATACACCATGCACACAT
GCATAATCATAGTTACACAAACCCACATTGCCCACACTTATTATCCCACC
TGTTATCCGCCCTTTTCACCATCCGACCCTTGTCCCATTTTCTTGTACTC
TAACCTTCTTTATACTATCACACCTTACGCACTCCTTGATGTGACTAGGC
ATTTACACCATTGCGCCAGTCCCAACCCCTTGCCTAGGAACACTCTTCAT
CTTTTCTTCCCCCTATTTTCTTGC
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACTGCCCGAGGATC
TGAGATGGAGAGCTTTGTTCAGTCCAGTCTTGTCTGTGGAGTGTATGTGG
GAATGGCAGCTTGAACTCCTGCCTGCCGGGATGAGCACCAGTGTCCATAT
GGATATGGCACGGGGAAGCCCAGCAGAGTAGGGTCTTATGTGGCTGGACG
TGGCAGGGGTGCATGGGGGCTTTCACCAGCCTGGTGGTGCCTGGATGCTT
TTGGTTTAAGATAGCACCCCAGTTAGCTGTGTGAGCTTTCCCATTCTAGC
ACCTACCACATTTTTTGAGACACCCCCCCCCTCTCTTCTAAAAAGGTTCT
AATTACTGAGCTGAAACACCACCACACACTTATCTGTGTCGATTAGGACT
AAGGAAGCCTGGCCGAGAAGCTTAATCTCCTGCTTAAGCGGCCCGGAGCG
TGTTAGTGCACTGTCTTATTAAGGACCCCATTGCATGTCACCTTATGGAT
TTGCCGGTAGCCTCCTTTCTCCTCCTCCCACCCCTGGATCCTCCCCTTTC
CCTCTTCTTTCTTCCTCCCCCTCTTTCTTTTTCTTCCTTTTCAATTCCCT
CTTTCTTTCCATGCCCTCTTTTCCTTTCTTCTACCCCCTCTCTTCTTTTT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_h06.g1 MSMg01no089_h06.g1 CHROMAT_FILE:
MSMg01no089_h06.g1 PHD_FILE: MSMg01no089_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:16 2005
         (279 letters)



>mm_chr8_126773720_126774400
          Length = 681

 Score =  466 bits (241), Expect = e-136
 Identities = 270/281 (96%), Gaps = 4/281 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccactgcccgaggatctgagatggagagctttgttcagtccagtcttgtctgtggagtgt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ccactgcccgaggatctgagatggagagctttgttcagtccagtct-gtctgtggagtgt 259

                                                                       
Query: 61  atgtgggaatggcagcttgaactcct---gcctgccgggatgagcaccagtgtccatatg 117
            |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 260 gtgtgggaatggcagcttgaactcctcctgcctgccgggatgagcaccagtgtccatatg 319

                                                                       
Query: 118 gatatggcacggggaagcccagcagagtagggtcttatgtggctggacgtggcaggggtg 177
           ||||||| ||||  ||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 320 gatatggtacggaaaagcccatcagagtggggtcttatgtggctggacgtggcaggggtg 379

                                                                       
Query: 178 catgggggctttcaccagcctggtggtgcctggatgcttttggtttaagatagcacccca 237
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatgggggctttcaccagcctggtggtgcctggatgcttttggtttaagatagcacccca 439

                                                    
Query: 238 gttagctgtgtgagctttcccattctagcacctaccacatt 278
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttagctgtgtgagctttcccattctagcacctaccacatt 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 681
Length adjustment: 9
Effective length of query: 270
Effective length of database: 672
Effective search space:   181440
Effective search space used:   181440
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)