BAC Information

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BAC

Clone NameMSMg01-089H11
Chromosome8 (Build37)
Map Location 77,522,512 - 77,522,666
singlet/doubletsinglet
Overlap geneHmgb2l1
Upstream geneIsx
Downstream geneTom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik, LOC666036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089H11.T7 (MSMg01no089_h11.b1)MSMg01-089H11.TJ (MSMg01no089_h11.g1)
ACCAG307958AG307959
length784759
length of high quality
(start - end)
173 (115 - 287)199 (174 - 372)
definitionCHROMAT_FILE: MSMg01no089_h11.b1 PHD_FILE: MSMg01no089_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:17 2005CHROMAT_FILE: MSMg01no089_h11.g1 PHD_FILE: MSMg01no089_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCNN
NNNNNNNNNAATAATATNNTTTTTCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCGCGGAATTCCAGCAATCCAAGGGCTGACTGGAAC
ACAGGAGTGTCTTGTCAGCTCCTCCCTCTGTGCATACACTCCAGTTGAAC
TTGCAGGGAGGATGCTAAGCTTAACTGGAGTTAATTCGTGTCTTAAAGTT
GACATTTGAAGAAATTTAAGATACTTCTCAATTTATAAAAAAAAATCTTC
CAAAATTAATGAGAATTTCTGGAATGCTAACAGGACTAATAACACTGAGA
CAGGGTAGAAACTGACATTAAGTCAGAGGCCGGGTTCTATCATAGTCACA
GGATATACAGATAAAGCCAGATGCTGATTTTTTTCTCACCCCCCCACCCA
TCGGAAGACCACAAAGTCCTACTGATGAGTCTGCTGACCTTGAAAAATAA
ACAGCACACGCCGAGATACTAATAATTTAAAGCTTTTCATTCCATTGGGC
TTTATGAATTTATTTAAATTAACCACTAAAACGGGCATACTTCTCACATG
TGTTGGCTATATGGAAATTTCCAACACTAAACAGCCCTTTTTAACGGCTA
CGTTTTTACCAAATATTTATCCCCTGTGGGAAAAATCTATTACCTCAAAG
CCTCCTTAAATCAATTTAAAACTCTTCCAATTTAAAAGGTCTAAGTATTG
GGCTCTGTCTTTTGAAACATGATTCTCCTTATTA
NNNNNNNNNNNNNNNNNNCCCCNTTCCCCCCCCCCCNNNCCNNCACATCC
TNAATTCTATGATGTGTGTAGCCTGGNGGCGCCTGGTTCCGTATGGAGGN
GAACTATAGAAGGTTCCCCAAAACACGCGCAGGAGAACTCAATGTCTGAG
AAACATTTAAAGAATGTTTAACACCCTTATCCATCAGGGAAATGCAAATC
AAAATGACTTTGAGAGTCCATCTTATACCTGTCAGAATGACTAAGATCAA
AAACACAAGTAACAGCTCATGCTAGTGAGCAAGGGGAACACTCCTTCCTG
CCTACTTCCCTCCCCCCACTTCATTCCTGAGTCCTTGAACTTCCCAGTGG
CACCTGGGTACCTGGCTCCTTTTTTTTTTAACTTAGGGAACCCCTGCCTC
CTCAACCTCATTCTGCCTTGCCCCTCACCAGGGCTGGTTCTCTTAGGCTA
CATTTGTGGAACTACACGCATGTTTCCCCCCCTGGGAAGGGGAAACAGAT
TTTGTGGGCGGACTGCCGATAGGTGGTGACGGAAATAAGGACCCGTTCAT
TCCTCTATTCCCACATTTCACGTACATTCTATCATCTACCCTTTAAATAC
ACGCTCTTACCAATCTTATCCCATCCTTTTTCGTCATCACTTCCAATCCC
TCGAACATCAAACATATCTTATACCACTACCCTAATTTTATTTACACTAT
CATACACACAACCATTCCTTTTTTCCTTATACACCCAACCTCACATATCT
TCTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_h11.b1 MSMg01no089_h11.b1 CHROMAT_FILE:
MSMg01no089_h11.b1 PHD_FILE: MSMg01no089_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:17 2005
         (173 letters)



>mm_chr8_77522308_77522881
          Length = 574

 Score =  284 bits (147), Expect = 2e-81
 Identities = 153/155 (98%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcc-agcaatccaagggctgactggaacacaggagtgtcttgtcagctcctccct 63
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggaattccaagcaatccaagggctgactggaacacaggagtgtcttgtcagctcctccct 300

                                                                       
Query: 64  ctgtgcatacactccagttgaacttgcagggaggatgctaagcttaactggagttaattc 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctgtgcatacactcgagttgaacttgcagggaggatgctaagcttaactggagttaattc 240

                                              
Query: 124 gtgtcttaaagttgacatttgaagaaatttaagat 158
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 gtgtcttaaagttgacatttgaagaaatttaagat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 574
Length adjustment: 8
Effective length of query: 165
Effective length of database: 566
Effective search space:    93390
Effective search space used:    93390
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)