BAC Information

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BAC

Clone NameMSMg01-089K09
Chromosome8 (Build37)
Map Location 8,052,955 - 8,053,270
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039836, Efnb2, 9430010O03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089K09.T7 (MSMg01no089_k09.b1)MSMg01-089K09.TJ (MSMg01no089_k09.g1)
ACCAG308092AG308093
length719765
length of high quality
(start - end)
320 (36 - 355)183 (184 - 366)
definitionCHROMAT_FILE: MSMg01no089_k09.b1 PHD_FILE: MSMg01no089_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:31 2005CHROMAT_FILE: MSMg01no089_k09.g1 PHD_FILE: MSMg01no089_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGC
CCATGCACTCTCTCTGGTTGGTGGTTCAGTCTCTTTGAGCCTCTCATGGG
GAGCAGGGCCATTATGGAAGAAGGACAGGGTTTTCTCTCTCAACTTTAAC
ACGTTTCAGGCTGCACAGAACCATCCTCCTCACACTATTCACATCCCCTT
TTTGTGGTTGAGGGCTGGCTATACCTGGGAGCTAAACTACTGCTTCTGAG
TCTGACACATCATTCAGAGTTAGAAACCTTAGTTTATAAAACTTCTATAG
AGACAGCCTGATGATATTTGCAATGATTCAGTTGTCTGGTCTCTGCGAAA
ATTGTTCCCTGAGATGTTCATTATTTCCAACTACATCTGATTGCTTCCTG
GATCGACCAACTGTTCCTGGAGTAACAATGCTGATATAAAGAGGTGGCTC
TCATTACGTATGCCCATGTTACTCATGGACAATTGGCTCTTTTTTCTGAG
GAAATAGAAGTGTTCTTACTACCATTAGAACCTGACTGTTTCCCTGTGCT
GGTTAGCACCTTATTTTGCCGCTACCACCGCTTTCTTGTCCCCTGTATCT
GTCCCCTTTACCCCTTATTCCCAGTTTTTGGCATTCCGTTACCCGCGTTA
CTTCATGTTTAATTTTTTTTATCCTCCCCCGTTTTGCTCGTCCGTTATTT
TTTCCCCCCTCCCCTCTCC
TTTTNNNNNNNNNNNNNTTTCCNNNTTTTTTTTCTTTTCCCCTCCTTCTT
CCTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAACCGAATGGTAGA
GAAGCACCTGAAAATTGGTTCCACAAAAAAAAATCATCAGGGAAATGCAA
ATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGAGAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGAGATTGCAAGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCATAATATTGCACATAGTAATACCAGAGGATCC
TGCAATACCTCTCTTTGGGCATACATCCAGAAGATGTTCCAACTGGTAAG
AAGGACACATGCCCCACTACATCCATAGTAGCCTTATTTATTATAGACAG
AAGATTGAAAGAATCCAGATGCCCCTCATCAGAGGAACGCATACAGGAAA
TGCGGTAAATCTAAACAATGAAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAAATCCAAGCAAAATGCGAGTAACTGGAGGGCATCATCCTGAG
TGAGGAAACCCTAATCACAAAGGGAACATATACAAATATGTGCTCCTTGG
TCTACCGTATATTTACTCCTAACTCCTAAGAACATCATGAATTTTATACC
TCCTCTCGTCCAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_k09.b1 MSMg01no089_k09.b1 CHROMAT_FILE:
MSMg01no089_k09.b1 PHD_FILE: MSMg01no089_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:31 2005
         (320 letters)



>mm_chr8_8052690_8053409
          Length = 720

 Score =  551 bits (285), Expect = e-161
 Identities = 309/317 (97%), Gaps = 2/317 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaggcccatgca-ctctctctggttggtggttcagtctctttgagcctctcatg 63
           |||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct: 581 gaattcaaggcccatgcagc-ctccctggttggtggttcagtctctttgagcctctcatg 523

                                                                       
Query: 64  gggagcagggccattatggaagaaggacagggttttctctctcaactttaacacgtttca 123
           |||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 522 gggagcagggccatcatggaagaaggacagagttttctctctgaactttaacacgtttca 463

                                                                       
Query: 124 ggctgcacagaaccatcctcctcacactattcacatcccctttttgtggttgagggctgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggctgcacagaaccatcctcctcacactattcacatcccctttttgtggttgagggctgg 403

                                                                       
Query: 184 ctatacctgggagctaaactactgcttctgagtctgacacatcattcagagttagaaacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ctatacctgggagctaaactactgcttctgagtctgacacatcattcagagttagaaacc 343

                                                                       
Query: 244 ttagtttataaaacttctatagagacagcctgatgatatttgcaatgattcagttgtctg 303
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 342 ttagtttataaaacttctatagagacagcctgatgagatttgcaatgattcagttgtctg 283

                            
Query: 304 gtctctgcgaaaattgt 320
           ||||||| |||||||||
Sbjct: 282 gtctctgtgaaaattgt 266


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)