Query= MSMg01no089_o12.b1 MSMg01no089_o12.b1 CHROMAT_FILE:
MSMg01no089_o12.b1 PHD_FILE: MSMg01no089_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:53 2005
(538 letters)
>mm_chr8_55237538_55238479
Length = 942
Score = 951 bits (492), Expect = 0.0
Identities = 525/538 (97%), Gaps = 4/538 (0%)
Strand = Plus / Plus
Query: 5 gaattcacaactacccagaatgatgttagttacacttactgaaccatcctcattaaatag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaactacccagaatgatgttagttacacttactgaaccatcctcattaaatag 264
Query: 65 aatgaaaaaaccattatatgatatattctatgttctccatgcttacctgtgtggagttag 124
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatgaaaaaaacattatatgatatattctatgttctccatgcttacctgtgtggagttag 324
Query: 125 agaagttcagttataaaatcccttcaaactgtgatcaggacttatccactttctaattgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 agaagttcagttataaaatcccttcaaactgtgatcaggacttatccactttctaatcgg 384
Query: 185 gtattatacattaaataaaaattaaacatcataccattaatattaccatcagtcctagat 244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtattatacattaaataaaaatcaaacatcataccattaatattaccatcagtcctagat 444
Query: 245 catgttagcattatctatgattaacgttgttctttatcatac----taaagaaacttaac 300
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 445 catgttagcattatctatgattaacgttgttctttatcatacatactaaagaaactttac 504
Query: 301 taaaagcaaatattttaaaacatacaatgtgccttcacttcaagagaaatttttaagcat 360
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 505 taaaagcaaatactttaaaacatacaatatgccttcacttcaagagaaatttttaagcat 564
Query: 361 cccatatgtatagtgtatgtctgtgtgtttctttgcatgtgtatgtcgacatgtgtgctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cccatatgtatagtgtatgtctgtgtgtttctttgcatgtgtatgtcgacatgtgtgctg 624
Query: 421 atgcacaaacacatggatgatcatgagtataaacacaggaattgaccctgatgctgtctg 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgcacaaacacatgggtgatcatgagtataaacacaggaattgaccctgatgctgtctg 684
Query: 481 ccggacctgtgggctctctcactttaacctctgtctatctctgaagcactgggggtgg 538
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 685 ctggacctgtgggctctctcactttaacctctgtctatctcagaagcactgggggtgg 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 942
Length adjustment: 10
Effective length of query: 528
Effective length of database: 932
Effective search space: 492096
Effective search space used: 492096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no089_o12.g1 MSMg01no089_o12.g1 CHROMAT_FILE:
MSMg01no089_o12.g1 PHD_FILE: MSMg01no089_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:53 2005
(448 letters)
>mm_chr8_55322970_55323819
Length = 850
Score = 843 bits (436), Expect = 0.0
Identities = 446/450 (99%), Gaps = 2/450 (0%)
Strand = Plus / Minus
Query: 1 atgtgcccgtgtccttaggttacttttagaatattttgg--ttttttttaaatatctcca 58
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 506 atgtgcccgtgtccctaggttacttttagaatattttggttttttttttaaatatctcca 447
Query: 59 ggggaatatctgcctaatattcagctatggagaatgttgaaacctcatgttcattggcag 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggggaatatctgcctaatattcagctatggagaatgttgaaacctcatgttcattggcag 387
Query: 119 attcagtcattgagttgtcttgtctatgcatcaacaggatcaactgtatgacttcacaca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 attcagtcattgagttgtcttgtctatgcatcaacaggatcaactgtatgacttcacaca 327
Query: 179 gaacacttcaatcagataaagtgaaaaccttgaacatccttagattttatgaacctactg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gaacacttcaatcagataaagtgaaaaccttgaacatccttagattttatgaacctactg 267
Query: 239 aagagaggacaccaaacttcagattcactaaagtctgtctactatctaggggatgtgatt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aagagaggacaccaaacttcagattcactaaagtctgtctactatctaggggatgtgatt 207
Query: 299 aaaaccctaaccagcaccatggagctcttgtctctagctgcatatgcatcaaaagatggc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aaaaccctaaccagcaccatggagctcttgtctctagctgcatatgcatcaaaagatggc 147
Query: 359 ctagtcggccatcactgcaaagagaggcccattggacttgccaactgtagatgccccagt 418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 146 ctagtcggccatcactgcaaagagaggcccattggacttgccaactttagatgccccagt 87
Query: 419 ataggggaacgccaggaccaaaaaggggga 448
||||||||||||||||||||||||||||||
Sbjct: 86 ataggggaacgccaggaccaaaaaggggga 57
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 850
Length adjustment: 10
Effective length of query: 438
Effective length of database: 840
Effective search space: 367920
Effective search space used: 367920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
