ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGAAGCTTCCTACAGAGTTGTAATTTGAATGTAACTATGTGTAACCC
CAAATGCCTAGATCTTTCTACCAAATCCCTTGCCAGTAGAGTACAGTCCA
TTTCTAACAGAGTTGGAGAATGAGCAAAGCTTGAATAAGAAATGTCCCCC
GGCAGCTCATGCTCTTGAGTATGGTCCCCAGCTAGTGACAGTGTTTGTAT
AGGTTGTATAACCTTTACGCGTAAGAGCTTTTCGCTGGACCAACGACATC
ACCAGGAGCACGCCTTGATAGTTCCTGCCTGACAAAGTGATGTCTAATGT
TCCTGTCTTATTCAATTGCTCCCCCGACCCCTCTATTATTGCGACAAAGA
CCTAGGAACATGCCAGCCCAAATTAGCGATTTCTTTCTTACACTGACTCC
ACCAGTGTAAATCTGCCTTAATAATAGAACAACGAACTAAAACTAACGTA
AATATATCTCCTATTATCAGATTTCTTAATTATCAAATTTGTTCCGCTAC
CATTTAACTATTTGATATCAATTAATTTTCCTTCATCAATATTCTCTCCT
AAATTCCCTCCATTTCGTTGTTCCTTCTTCTTTGTCACCCTTTTTCTCCT
ATTATATATAGCCTCCTATCTTCTTCTTTGTATTTTGATATAGTGGTATT
CTATACAAAGCTTTCTTTGTCCATTCTCGTCTCACCTTCTCTCGTGGTTC
ATCTC

GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGGCCAGAGACACTGTCTCCAAAAACA
GCAAATAAGCAAACAAACTCATAAATGCCCCCAAAATTCAGACTTCAGTC
GTCCAATCCATACTGCTGCCATTGTAGAGAGAAAATTATGATAGATCAGT
CTCCCAAGAAGACAGATACATCCATTCCTTACCTGACCAAGGCCTCCAAA
ACTCCTCTTGGGGACAATATTTCTAGGTGCTAAGTTTCTACTGACATACT
GAGTGCCTGGACTTCACCCTCTGATCCTTCTTGTCTAGTACAAATGTTGA
TATTTCCTAGTTCAGCTGTACAACTAATTGACCAAGAGATGTTCCCATCT
TAATGGATAATTGTTAATTCTACCCGATTGAACTGATTCTCTACCATTAC
ATTTCATTGTTACGCTCTATTTATTTGCGCGTACTATGCATGTGTGCGTG
AGTGAGGCGATCTTGTTGTTGCCTTTCATTATCTTACTCTCCTTTTTTCT
GTATCTCTAATTGCCCACCTCATTCATCATAATAATCTCATCTTTTCAAC
TATATCTATAATCCTTTATAGAGAATTCTCTTTTATTATATCTTTTTTTT
TCCACCTCCAACATCATCATTTTAACTTACATCATTTACCATTTACTCCC
CTTCTCTTCCTTTCTCTTCTCTCCCCCATATCTTTTAATC

Query= MSMg01no090_p05.b1 MSMg01no090_p05.b1 CHROMAT_FILE:
MSMg01no090_p05.b1 PHD_FILE: MSMg01no090_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:17 2005
         (159 letters)



>mm_chr8_49997123_49997681
          Length = 559

 Score =  284 bits (147), Expect = 1e-81
 Identities = 156/159 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgaatgtaactatgtgtaaccccaaatgcctagatctttctaccaaatcccttgcca 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 303 atttgaatgtaactatgtgtaaccccaaaagcctagatctttctaccaaatcccttggca 244

                                                                       
Query: 61  gtagagtacagtccatttctaacagagttggagaatgagcaaagcttgaataagaaatgt 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gtagagtaaagtccatttctaacagagttggagaatgagcaaagcttgaataagaaatgt 184

                                                  
Query: 121 cccccggcagctcatgctcttgagtatggtccccagcta 159
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 183 cccccggcagctcatgctcttgagtatggtccccagcta 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no090_p05.g1 MSMg01no090_p05.g1 CHROMAT_FILE:
MSMg01no090_p05.g1 PHD_FILE: MSMg01no090_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:17 2005
         (249 letters)



>mm_chr8_49891245_49891893
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccagagacactgtctccaaaaacagcaaataagcaaacaaactcataaatgccccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggccagagacactgtctccaaaaacagcaaataagcaaacaaactcataaatgccccc 260

                                                                       
Query: 61  aaaattcagacttcagtcgtccaatccatactgctgccattgtagagagaaaattatgat 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaattcagactttagtcgtccaatccatactgctgccattgtagagagaaaattatgat 320

                                                                       
Query: 121 agatcagtctcccaagaagacagatacatccattccttacctgaccaaggcctccaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatcagtctcccaagaagacagatacatccattccttacctgaccaaggcctccaaaac 380

                                                                       
Query: 181 tcctcttggggacaatatttctaggtgctaagtttctactgacatactgagtgcctggac 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tcctcttggggacaatatttctaggtgctaagtttctactgacacactgagtgcctggac 440

                    
Query: 241 ttcaccctc 249
           |||||||||
Sbjct: 441 ttcaccctc 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)