BAC Information

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BAC

Clone NameMSMg01-091D18
Chromosome8 (Build37)
Map Location 52,878,828 - 52,879,115
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667517
Downstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091D18.T7 (MSMg01no091_d18.b1)MSMg01-091D18.TJ (MSMg01no091_d18.g1)
ACCAG309240AG309241
length716742
length of high quality
(start - end)
344 (47 - 390)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no091_d18.b1 PHD_FILE: MSMg01no091_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:40 2005CHROMAT_FILE: MSMg01no091_d18.g1 PHD_FILE: MSMg01no091_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCACACGTGAGAGGATCCGCGGAATTCTCTTTTTAGCTCTCGAGCCCATT
TTTTAAGTGGGTTATTTGGCAGCCTTATTCATTGTAGGCAGAAGATGCAC
CTAACCCAAATGTCTCTCAACCAAAGAGGGAATCTAGAAAATGTGGTCCA
TTCTTTCAATGGAATACCCTTCAGCTATAAAAAAATGAGGACATTATAAA
TATTGCATGCAAATAGATGGAACTAAAAAATATTCTGTGTAAGGTAACCA
AGACCCCAAAGGACATGTATGGTGTGTACTCACTGATAAGTGGATATTAG
ATAAAAGGTACAGAATACTTAGGATAAAACCCACAGACCATGAGAAGTTA
AACAGGAAGGCCCAAATAAGCATGCTTTAATTCCATTTACAAAGGGGTGA
CCTTAGCCAAAATGTCCAACACTGGGAGTAGGTAACTCTAAGACTCCAGT
GGAGTGTTGGGAACAAAATAAAGGCGCAGGTGAGGTTTGGCGAGAAGTGT
GAGATGACAAATATGCCTTATCCAGCCAGAGTTTCTGTGCTCTGGGCACG
CAGATGCTGTGATACTGCCAGGTGCTTTCCACATCGTCCTGGTTGGAGAT
CTAACCCTCCGACCCCAATGGACAGTCGGTGGAAAAAGTCCAATCTCCAA
TTTGCTGACCCCGAAGTCCCATCTGGAATCCTCTGGGTAAAATGATAGAC
GCACAACGCAAACAAT
ATCGATGAAGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAGCCCCATTGATGCTCCAATTGC
ATAGGACTAGCACACCTTTCTTGTACCCCAAGAGCAGAAATTTTTAGGCT
TTAGTGTTTTCTAAAACAAATTAGTTGCTCATAAAGCAAAATCTCAATCT
AATCAACATAATAAACTGCTGAGAGGCAAATAGAATATTAGTCTTTCAAA
ATATAGGCACAAATAGATAGACTTCAATGCTTACGTAAATACCTGAAGTC
ACCACTGTTCCTGGTGCAGTGCCATTTCTACCAAGATATTGTATTCATGT
CACTACTATGAATATGTATGTTACTGCACCCCTTTGTAAACACTGAACAT
AAATTAGACAAAAGCACCCCACGCGTAATGAACAAAAAGACTAAGTAGCA
TACACAGCTGCATTAATATCCAAAGACTTTGTGCCTCACTTGGACATAAT
TTTTTTTAATTGAGTCAAGATACATATGATATATATACATGCCTGTTGTT
TATCCACCTAAGCGTTAATATTAAATTCACTCTTGCTCGAAGACAATATT
TGATGGCAAATGTACGAGAACTTCCGCCTATTTCCTCGTAACTTATTCAT
ATCATTTTCTTCTTTTGAAATGTCTTGAAACATACATCGGAACATTAAAA
CTCTTTCATCTAAATACTGCCGTGACAAACTGTGGCCCGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_d18.g1 MSMg01no091_d18.g1 CHROMAT_FILE:
MSMg01no091_d18.g1 PHD_FILE: MSMg01no091_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:40 2005
         (289 letters)



>mm_chr8_52878628_52879317
          Length = 690

 Score =  503 bits (260), Expect = e-147
 Identities = 281/292 (96%), Gaps = 9/292 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagccccattgatgctccaattgcataggactagcacacctttcttg--taccccaa-- 56
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||    ||  
Sbjct: 201 ctagccccattgatgctccaattgcataggactagcacacctttcttggata----aaat 256

                                                                       
Query: 57  -gagcagaaatttttaggctttagtgttttctaaaacaaattagttgctcataaagcaaa 115
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agagcagaaatttttaggctttagtgttttctaaaacaaattagttgctcataaagcaaa 316

                                                                       
Query: 116 atctcaatctaatcaacataataaactgctgagaggcaaatagaatattagtctttcaaa 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atctcaatctaatcaacataataaactgctgagaggcaaatagaatattagtctttcaaa 376

                                                                       
Query: 176 atataggcacaaatagatagacttcaatgcttacgtaaatacctgaagtcaccactgttc 235
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atataggcacaaataggtagacttcaatgcttacgtaaatacctgaagtcaccactgttc 436

                                                               
Query: 236 ctggtgcagtgccatttctaccaagatattgtattcatgtcactactatgaa 287
           |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 437 ctggtgcagtgccatttcaaccaagatattgtattcatgtcactactatgaa 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space:   190680
Effective search space used:   190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)