BAC Information

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BAC

Clone NameMSMg01-092B15
Chromosome8 (Build37)
Map Location 113,166,819 - 113,167,051
singlet/doubletsinglet
Overlap geneVac14
Upstream genePkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398
Downstream geneBC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092B15.T7 (MSMg01no092_b15.b1)MSMg01-092B15.TJ (MSMg01no092_b15.g1)
ACCAG309871AG309872
length714703
length of high quality
(start - end)
189 (130 - 318)233 (129 - 361)
definitionCHROMAT_FILE: MSMg01no092_b15.b1 PHD_FILE: MSMg01no092_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:50 2005CHROMAT_FILE: MSMg01no092_b15.g1 PHD_FILE: MSMg01no092_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTTCCTCTCTTTCGCCTTGTTGAGGCAAGGTCTCCTCTTGTT
TCTGCTCTGTCCTATGTGGTCTCAGCCCAGTTGGCCCATGAACTGGTTGG
TTCCTGCCTTTCGCCGAAGGAGCATCAGGATTAGCGATATGTGCCACTTG
TCTGGAGGGGTCTGGGGTTTAACTGAGGTCTCTAGGCTTACCACGACCAG
CGCTTGTATCCACCGTCTTGTCAGCTCCCAACAGCTTTCTTGTGAGAGTT
ATAAAGTGAATGGACAAAACAATGTTTCCGGGGCTGGAGAGATGGCTCAG
TGGTTAAGAGTATTGTATTGCTCTTCTGACCGCCCTGAGTTCAAATCCCA
GCAACCACATGTTGTCTCACCCCCATCTGTAATGAGATCTGACACCCTCT
TCTTGAGTGTCTGATTACAGCTACCGCGTACTTACCTACTTTTCTCTACT
ATTTATTAAAACAAAACACACACTTAATTTTGTACCCAGTTTAAATCTGG
CGGTTCTTAGGGCCTTGAGCCATCATTTAGGAAGTGTCTTGGCTTCTTTA
CCTCGCCTCCCATTACTTTGACCCTGTCCCCCCTTATTCTCCCTTTCACT
CTGCCTTGCCTTTTCTCTTAATTCCTTTTGTGTTTTTTTGTCTTATTCTG
TGCATCTTTTTGTA
CGATGAAATAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTGGGCTACATGAGAC
CTTGTCTTTAAAAAGTCATATATACCCCAAACAAAACCTCACATAAGAAA
TATCTATGGCTCCCTAATGTTTGATATAAATGGCTGAATGAATGAATGAG
TGACAAAGAAAGGACAGCTCCTCCTTATAGAAAATTCCAGCTAAAAGCAG
GAAGAGTGACTGGAGGTGTGGCTCTAGTCATGGCGCACTTGCTTAGCATG
TGCAGGAACCTGTAGAATGGTGCACTTCCCACGTGAGTCCATAGTGCTGA
ACTGACCCTGGTAGGGCCAGTGGCTGCAAAAGCACTTCCAGTGTGGAGAC
GCCTGAGCTCCCTCCCAGCCTTCCATGGCAGTGAGGCATCTCTTAAATGT
TCATGCCCTGGTGAGTGAGCGAAAACATCTTACTCTGCAGCCAGACGATT
TCCTTGCGGTCCTGGCCTCTTAAAGCAGCTTGCCCTCTTCAAAATGCTGC
ACAGTGACACCCATCCCTGGGCCTGCTAGAGCAAATCTTCTGACCTTGTC
TGCCTTCTTCCCCTCTATTTTGACTGCCCTTGTATCGTCTGCCTGTCTTA
TATTTGAGCTAACATCTGCTGCCCGCTTACAACCATTTCTCATAGTATCC
CAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_b15.g1 MSMg01no092_b15.g1 CHROMAT_FILE:
MSMg01no092_b15.g1 PHD_FILE: MSMg01no092_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:50 2005
         (233 letters)



>mm_chr8_113166619_113167251
          Length = 633

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaaaacctcacataagaaatatctatggctccctaatgtttgatataaatggctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacaaaacctcacataagaaatatctatggctccctaatgtttgatataaatggctgaa 260

                                                                       
Query: 61  tgaatgaatgagtgacaaagaaaggacagctcctccttatagaaaattccagctaaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaatgaatgagtgacaaagaaaggacagctcctccttatagaaaattccagctaaaagc 320

                                                                       
Query: 121 aggaagagtgactggaggtgtggctctagtcatggcgcacttgcttagcatgtgcaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaagagtgactggaggtgtggctctagtcatggcgcacttgcttagcatgtgcaggaa 380

                                                                
Query: 181 cctgtagaatggtgcacttcccacgtgagtccatagtgctgaactgaccctgg 233
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgtagaatggggcacttcccacgtgagtccatagtgctgaactgaccctgg 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)