BAC Information

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BAC

Clone NameMSMg01-092I15
Chromosome8 (Build37)
Map Location 6,702,943 - 6,703,092
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040360
Downstream geneEG665127, EG546032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092I15.T7 (MSMg01no092_i15.b1)MSMg01-092I15.TJ (MSMg01no092_i15.g1)
ACCAG310203AG310204
length811802
length of high quality
(start - end)
151 (226 - 376)---
definitionCHROMAT_FILE: MSMg01no092_i15.b1 PHD_FILE: MSMg01no092_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:25 2005CHROMAT_FILE: MSMg01no092_i15.g1 PHD_FILE: MSMg01no092_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTTTTCTCTTTTTTTTTTCTTTCCTTTTCTTTCTTTCTAT
TCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GTAATTCCAGTGAATATAGAGAGGATAAAGTTGAATTGATAAACATCTAG
GAAGGACTTATTGTCTTATGTTATTCCTGGGGTAGCTAGGGGATTAAAAA
AAAAACTTTCAAGAAAGACTATAGATTATTTTTCAAACATTTATAAAAGA
AGTCAGAAATTCACATTCTGCATGCCTTTTCATGGTTGTTCTGTAAAAAT
TTCTCTCACTAGTCAATTTATCTCTTTATGTATCTCTGACCTCTCCTGAT
TTCATATAATATAATAATTTGCTGATGCTACATGATTAAATAAACCTTCA
CTATCTGACGACAGGAGTTTATTTTTCTTCCTTACTAATTGTACTCTTTC
CTCTAAGACATATCCTCTCTTACTTTTATGTAAAATGTTGTATTGCCACC
TTTCTGTGAAGTATGTTATCCATTTTATTCCCCCTCAATACTATCCAGAA
TATCCCCCTCAATACTAGTTCCCTTCCATACCGATCTTCTTCAGCTCTTT
CCTATTCAGATTCCCCTTCTTCCTTTTAGGGCCCCCATACTTTCCCACCT
TTTCTTTTTTCCCTGCCATTCCATGATCTGCGGTGACTCCCCCGTATTCA
TGAATTTTTAGCTACTTCCCCGAGTTAATTTTTTTTCCCTCCTGATTTTT
CTTTTTATCCCTCTATATTGCTTGGAATATTTAACAAACCCCTATCCTTA
TGAACTTTGGT
GTTTTCGTTTGTCCCGCGTTGTGTGCTCCTCTTCCCCAACATCCACACGA
TGAAGTGGGAGGCCGGNGGCAGACGGTTCCGCACTGAGGNGAACNANAGA
AGGTTTCAAAAAGAGAGGAAGNCANCGGAAGGNGGCNAGGGGAAGAAGGG
AAGCCAAGTTTCCCCCACGAGGGGGGGAAGGCCCAGGCCCACCACGACAC
ACCCACCCCAACAAGACCACACCACAGAAAAGGGCCACTCCCGGGGCCGA
GCATAGACAAACCATCACACAAACATTTTCTTAAAGGTGTGTGTGTGTTA
GCAAAAGACTATGTCATATCACATTTATTCTATGACATTGCACATAATGC
TCACACAATTTTATTTTTTTGANCACCCGAACCCGCCAAAACCGACATAT
CTTATTTTTCCCCCCACCACCCGTACGAATTCAATAGCAGTCTACGCCTG
TGGCCCCTATCTACAAAAAGAGAAAAAAGAACACTCGGTGAAGTTTCCCA
TTCCTCCCCCACATTTTTACGTGTTACATGCGAACTGATACTAATACCCG
GGTTCAAAATGAATTCACTAGATCCACCACAACAAGTACATTCCAGACCA
AGCAAGACATATGGTCCAACTATGGTACATTTACTACTAGGAGTCCAAAC
ATCATATACACTGTATACGCGAGTAAGCATCCTAAGATATAGCGATTAAA
CAGAATTCCCAATTGTTTTTTTTTCCAGGCCGCGTCGTTTACTTCGCTTT
TCCCTCTTTCCGCTTCATGGTTTTGTGATTCGCATGACCAATATTGACCC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_i15.b1 MSMg01no092_i15.b1 CHROMAT_FILE:
MSMg01no092_i15.b1 PHD_FILE: MSMg01no092_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:25 2005
         (151 letters)



>mm_chr8_6702743_6703293
          Length = 551

 Score =  259 bits (134), Expect = 5e-74
 Identities = 146/150 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatttttcaaacatttataaaagaagtcagaaattcacattctgcatgccttttcatgg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatttttcaaacatttaaaaaagaagtcagaaattcacattctgcatgccttttcatgg 260

                                                                       
Query: 61  ttgttctgtaaaaatttctctcactagtcaatttatctctttatgtatctctgacctctc 120
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 261 ctgttctgtaaaaatttctctcaccagtcaatttatctctttatgtatctctgacccctc 320

                                         
Query: 121 ctgatttcatataatataataatttgctga 150
           ||||||||||||||||||||||||||||||
Sbjct: 321 ctgatttcatataatataataatttgctga 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 551
Length adjustment: 8
Effective length of query: 143
Effective length of database: 543
Effective search space:    77649
Effective search space used:    77649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)