BAC Information

Click to search

BAC

Clone NameMSMg01-092P07
Chromosome8 (Build37)
Map Location 58,136,895 - 58,221,352
singlet/doubletdoublet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356
Downstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092P07.T7 (MSMg01no092_p07.b1)MSMg01-092P07.TJ (MSMg01no092_p07.g1)
ACCAG310519AG310520
length725716
length of high quality
(start - end)
295 (73 - 367)364 (69 - 432)
definitionCHROMAT_FILE: MSMg01no092_p07.b1 PHD_FILE: MSMg01no092_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:59 2005CHROMAT_FILE: MSMg01no092_p07.g1 PHD_FILE: MSMg01no092_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,136,895 - 58,137,189)(58,220,989 - 58,221,352)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGTTATGTCACATAGTAAGTCTATGCCCCTTAGACATACGCCTT
CTGTTTGCAATAATAAAATATATACCTAAGGTAAGATAAAGTAATAGATA
AGGATAGTTTTATGAAGTTCAAGTTAGTATATTAGTTTCATTTTCTTAGG
AGTTTCTTGAGTTGTTTACAAAAACCAGCTCTAAATTCACCCTTAAGGAA
CATGAAGTGTTTATAAAGCAACTTGTAAAGTCAAATTGAACAGATTTGAC
TTTAGATTTATCTTCTGTTTCGGGGTGAGGGATATTCCTAAATTGTGAAA
TGATGAGAGGAAAGAAAAGAGTAATGGAGGCAGGGCAAATTAAGACAAGG
AAGAAACTATAGAGTGTGTTTTTCCCTATTAAATTTAAAAGAGATTTCTT
TGCGTGAAAATTACAGATTTGCACTGTCTCAACTAGTCATTTTCATTTTA
TTATCACAAAGAAGAACATCATTATTTGAGACTTAATTATATACAACTAG
GTCTGTTGTTACTGAGACATAAGAACTTGCTCATTTAAACCACTGCAACT
TTCAACTGTTTGAAGAATCTTAGTTTGCACCTTTTAATAAAAATAATCTT
TAAAAACACTTTTCATCCCTGCCTGAATCTCAGTGCTATTAGCCTGAAAA
AAATAACTCTTCCATTTCTCTTTGC
AATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAATGCAATTTAACAAAATGACAAGAATAGTTA
TAAATTCTAAATAGTAATACCCACATTATGTAATTTTAATGAATATTTAA
AACATTTTTATAAACTTCTTCACATGTAGATGCTTTCTACAGACATAAAA
ACATTACAGAATATATAAAAAAGTAAAAAGTTCTCAAGTTATTTCATGAA
GACTACATAATTGTCCTATCAAGGGCTGAGAAGGATTTTATGAAGATGCA
AGGTTACATGTCAGTTTCATTTATAAAAGTACTAAAAACACAGTATACTA
GTAAATCAAATTCCACCACATAGATGATCATAACTAAATGTTTCAAGTCA
ATAACATAATTAAAATTTTCACCAAAATATAATAAGTAGAGAAATCTAAA
CGGCTAGTAGCCTACAACAAGGTCATCTGTCATGAAATGACCAAATTATG
ATGAAATTTTTACATACACCCATTTGAGCTATCAAAGATGTGGAAACAGA
ACCTATTAATTCTTCCTTGTGTAAAATGCAGTTACCCGCTATTGATAAAA
GCATACATTGCCATTACTCTCTAACAAGTCCCTACTTGAACAAATGTATT
AAAAATGACCCATCATCCTGCTTGAAAGTGACCAACCAGAGATGCATAAA
ATGGATGCCCTATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_p07.b1 MSMg01no092_p07.b1 CHROMAT_FILE:
MSMg01no092_p07.b1 PHD_FILE: MSMg01no092_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:59 2005
         (295 letters)



>mm_chr8_58136695_58137389
          Length = 695

 Score =  532 bits (275), Expect = e-155
 Identities = 290/295 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtctatgccccttagacatacgccttctgtttgcaataataaaatatatacctaaggt 60
           |||||||||||||||||||||| ||||||||||||||||||||||| |||||  ||||||
Sbjct: 201 aagtctatgccccttagacatatgccttctgtttgcaataataaaaaatatagttaaggt 260

                                                                       
Query: 61  aagataaagtaatagataaggatagttttatgaagttcaagttagtatattagtttcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagataaagtaatagataaggatagttttatgaagttcaagttagtatattagtttcatt 320

                                                                       
Query: 121 ttcttaggagtttcttgagttgtttacaaaaaccagctctaaattcacccttaaggaaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ttcttaggagtttcttgagttgtttacaaaaaccagctctaaattcaccctttaggaaca 380

                                                                       
Query: 181 tgaagtgtttataaagcaacttgtaaagtcaaattgaacagatttgactttagatttatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaagtgtttataaagcaacttgtaaagtcaaattgaacagatttgactttagatttatc 440

                                                                  
Query: 241 ttctgtttcggggtgagggatattcctaaattgtgaaatgatgagaggaaagaaa 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctgtttcggggtgagggatattcctaaattgtgaaatgatgagaggaaagaaa 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no092_p07.g1 MSMg01no092_p07.g1 CHROMAT_FILE:
MSMg01no092_p07.g1 PHD_FILE: MSMg01no092_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:59 2005
         (364 letters)



>mm_chr8_58220789_58221552
          Length = 764

 Score =  634 bits (328), Expect = 0.0
 Identities = 355/364 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgcaatttaacaaaatgacaagaatagttataaattctaaatagtaatacccacatta 60
           ||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||
Sbjct: 564 aatgcaatttaacaaaatgacaaaaatagttataaattctaaatagtaataagcacatta 505

                                                                       
Query: 61  tgtaattttaatgaatatttaaaacatttttataaacttcttcacatgtagatgctttct 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtaattttaacgaatatttaaaacatttttataaacttcttcacatgtagatgctttct 445

                                                                       
Query: 121 acagacataaaaacattacagaatatataaaaaagtaaaaagttctcaagttatttcatg 180
           ||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct: 444 acagacataaaaacattacagaatatagaaaaaagtgaagagttctcaagttatttcatg 385

                                                                       
Query: 181 aagactacataattgtcctatcaagggctgagaaggattttatgaagatgcaaggttaca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 384 aagactacataattgtcctatcaagggctgagaaggattttatgaagatgtaaagttaca 325

                                                                       
Query: 241 tgtcagtttcatttataaaagtactaaaaacacagtatactagtaaatcaaattccacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtcagtttcatttataaaagtactaaaaacacagtatactagtaaatcaaattccacca 265

                                                                       
Query: 301 catagatgatcataactaaatgtttcaagtcaataacataattaaaattttcaccaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catagatgatcataactaaatgtttcaagtcaataacataattaaaattttcaccaaaat 205

               
Query: 361 ataa 364
           ||||
Sbjct: 204 ataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)