BAC Information

Click to search

BAC

Clone NameMSMg01-093F08
Chromosome8 (Build37)
Map Location 107,355,758 - 107,356,124
singlet/doubletsinglet
Overlap geneBC015286
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik
Downstream geneMatr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093F08.T7 (MSMg01no093_f08.b1)MSMg01-093F08.TJ (MSMg01no093_f08.g1)
ACCAG310806AG310807
length1,2561,176
length of high quality
(start - end)		351 (37 - 387)374 (68 - 441)
definitionCHROMAT_FILE: MSMg01no093_f08.b1 PHD_FILE: MSMg01no093_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:49 2005CHROMAT_FILE: MSMg01no093_f08.g1 PHD_FILE: MSMg01no093_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TGACTGGTCCCCTTTTAAATAAAACCCCTTTGAGAGTCAGCTATGTCATT
CCCTTGACAGTATAATTCCACATATTCATACAACACATTTTAGCCACTCC
TCAGTTGATGCACATCTAGCTGACCTTATTGTGACTGTTTTTAACTGAGC
TCTTACGAACTTTTAAAAGTATGAGTCTTTCTGATTGGTGTCTTCAATTC
CTTGAATTGAGGATCTGAGGTCGAATTACTCAGTCACAGGATATATATGT
TTCACTTTTAAAGAGACTGTCAAACTGACATCTATACTGACTCTAACATT
TTGTATCTCCTCTAGCCATGTATGAGAGTGCTAGTGTTTCTTTATGTCTT
TGCCAACCCTTGGATCTATGGATCTTAAACGTGATTATACTGATTGTCCC
CCCCCCCAGCATGTTATTAATCTATTTTCTTGAAGCTGATCATCTACTCT
CTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTTCTCTTCTCTCTGGTGCG
CTATGTTGTTTTTGCTTTGTTCCTGTCTCGTCTTTTTTCATTCTTTCTGT
TTCTTCCATTTTTGTTTTTTTTATTTTTGTTCCCTTATTTCACTTCTTCT
TTTCTTTATTTCTTTTTCCCCTTAATATCTTTCTTCTCCTATTTCTACTT
TTTTCTTCTACCTTTCTCCCTTTTTTCCTATTCTTACTCTTTATCTTTTT
TTCTCTTATTTCTTTCTTTTTTTTCTTTTTTCCTTCTCTTCTTTTTTCCT
TTTTCTTTTTCTTCTTTTTTTTTCTTATTTTCTTTCCTTTCCCTCTATCT
TTATTTCTTTTTTTTTCTCTTCCTTTTTCTTCTTCTTTCTTATTTTCTTT
TTTTTTTTTTCCCCTTTTTCTTCTTCTTTTTTCACTCTTTTTTTTCTCCC
TCCCTTCTTTTTTTTTCTTTCTTTTTACCTTTCTTTTCTTTCTCTTCTCT
CTCTCTTTTATTCCTTTCTTTTATTTCTCTCCCCTATTTCATTTTTATCT
ATGTTACTTCTCTTACTATCTTCTTTATCTTACTTATTTTTTAATCTTCT
ATTTTCTTACTCATATTCTTCTTTACTTTCTTCTTTACTTCTTTCCTCTT
ATTTTTTTCTTTTCTCCTATATCCTTTTCCTTCTCTACTTCTTCTACTCC
TTATTTTCTCTACTTCTTCTCTTCACTCATTAATTGTATTTTTCCCCTTT
TTTTTA

NTTTGTAGCGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTATCTGCTCTCTCAATCTCTTTACACTGAAG
TGTCTCTTCTGTATAGAGTGATATTAGATGTCTCTGACCCTCTGAGTGTT
AGTGGGGCCACAAGATGTGTGTGCTTTTGCCTGGGTATTGGTAGGCATGT
GCCTCATATTTTTATCTATTGCACCAGTCCTCAAGCTGTGAGACATGACC
ATTGGAAAACACATATTTCTCATGCTCTTAGGAACTGAGAAACTGCTCAA
GAGCAACATTAAGTTAGAAGGTAGCAGTAAAAATAATTTTATGGTTGGGT
GTTTCTTATACCAGTCAATATCATTGGTTTTTCCTATGGTCGTAATCTAT
TTTTTGAGAATGTCTGATCTATGACTTGTTTTTGACCCGTTCCCTCCATG
CTTTTTCATGCTCTCCCTCCCACAAGTTCAGCTCTCGACATGCAGAACTT
GGCTGGTCTGACTGCATTCATTGCCCCCTGCCTGCTTAGTGAGTCTCACC
CTGCTCATGTTCGATTCTAATCAGGATCCCTTCGCTGATACCTTCCAGCC
TGTTATTGTTTTGTCTCCGTGTCTTGGCTTGTTCTCATGTTCTGACTTTG
TGCTGCTCATTTCACTTTCTTTTTTTCTCTTTTTTCCTCCTGCGTTTACT
TCTGCCTTGTCTCTTATTTTATTCTTTCCTTTTTTTTCTTTCCTTTTTTT
TTTCTTCTCCCTTTTTCTTCTTTCTCTTCTCTTTTTTCTTTTTCTTTTTC
TTATTCTTTTTTCTCTTTATTCTCTTTTTTTTCTTTACTTTCTATTTTAT
TTCTTTTTTTCTTTTCTCTTCCTTTTTTTTTTTCCTTTTTTTCTTTCTTT
TTTTTTTCTTTTTTCTTTTTCTCCTTCTTTCTTCTTTTTCTTTTCTTCTT
CCTTCCCTCTTTCCTCTCTCTTTCTCTTCTTTCTCTTTCTTCTTTCTTTT
ATTCTTCTTCTTTTTTTTTTTTTTCTTCTTCCTTCTTTGTTTATCTATCC
TTTCTTTTTTTCTCTCTTTTGTCTCATTTTTTTCTCTTTCTTTTTTTTTC
TTTTATTCTCCTTTCTCTCCTTCTTTCTTTTCTCTCCTTTCTTCTTCTCC
TATCTTTCTTTCTCTCCTTTTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_f08.g1 MSMg01no093_f08.g1 CHROMAT_FILE:
MSMg01no093_f08.g1 PHD_FILE: MSMg01no093_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:49 2005
         (374 letters)



>mm_chr8_107355690_107356464
          Length = 775

 Score =  658 bits (340), Expect = 0.0
 Identities = 361/368 (98%), Gaps = 2/368 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   atctgctctctc-aatctctttacactgaagtgtctcttctgtatagagtgatattagat 62
           |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 435 atctgctctctcaaatctctttacactgaagtgtctcttcagtatagagtgatattagat 376

                                                                       
Query: 63  gtctctgaccctctgagtgttagtggggccacaagatgtgtgtgcttttgcctgggtatt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtctctgaccctctgagtgttagtggggccacaagatgtgtgtgcttttgcctgggtatt 316

                                                                       
Query: 123 ggtaggcatgtgcctcatatttttatctattgcaccagtcctcaagctgtgagacatgac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ggtaggcatgtgcctcatatttttatctattgcaccagtcctcaagctgtgagacatgac 256

                                                                       
Query: 183 cattggaaaacacatatttctcatgctcttaggaactgagaaactgctcaagagcaacat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cattggaaaacacatatttctcatgctcttaggaactgagaaactgctcaagagcaacat 196

                                                                       
Query: 243 taagttagaaggtagcagtaaaaataattttatggttgggtgtttcttataccagtcaat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 taagttagaaggtagcagtaaaaataattttatggttgggtgtttcttataccagtcaat 136

                                                                       
Query: 303 atcattggtttttcctatggtcgtaatctattttttgagaatgtctgatctatgacttgt 362
           || ||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||
Sbjct: 135 at-attggtttttcctatggtcataatctatagtttgagaatgtctgatctatgacatgt 77

                   
Query: 363 ttttgacc 370
           ||||||||
Sbjct: 76  ttttgacc 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 775
Length adjustment: 9
Effective length of query: 365
Effective length of database: 766
Effective search space:   279590
Effective search space used:   279590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |