BAC Information

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BAC

Clone NameMSMg01-093K13
Chromosome8 (Build37)
Map Location 68,180,475 - 68,180,795
singlet/doubletsinglet
Overlap geneMarch1
Upstream geneSc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967
Downstream geneLOC100040986, 1810029B16Rik, Tktl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093K13.T7 (MSMg01no093_k13.b1)MSMg01-093K13.TJ (MSMg01no093_k13.g1)
ACCAG311040AG311041
length1,0521,249
length of high quality
(start - end)
322 (17 - 338)280 (119 - 398)
definitionCHROMAT_FILE: MSMg01no093_k13.b1 PHD_FILE: MSMg01no093_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:48:36 2005CHROMAT_FILE: MSMg01no093_k13.g1 PHD_FILE: MSMg01no093_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:48:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTAAAAAGAGTTCTCTGAACTCACAGATCTTTCCATATGTTTTTTTTTT
CTATAGGAAATGGATCCACAAACCCTTATTGAACCTATGGCTAGGGGAGA
GTCAAGGGCTTCTCTTTCTACCATGTTGCAGGCATTATCTCTTTCCTCCA
GGTCTGAAGGAAAGCTTTGCTAGTGGAAGAACTTTTGGTTAGCAATTTCC
CCCCTTCAGTGCTTTATATAAAGCAGACCCTTATCTTTATTTCTGCCAGA
AAGTATATTAACAGCCTTGTAAGAATCCCTGTACATGCTTTTTTTTCTCT
TTTGCAGCTGCCAAGACTTTCTTTGCATTTGTTTTTTCCATTTTTTTTCT
CCCCCCCCCTCTCTCTAAGTTGAATCTTAATAAAAATTTTTGTAATTTCT
GGATTGAGATTTTTCTGTTTCTCTTATGACCTTGAATCATTATTCTTATT
AATTATCTATATTCGTCCGTCTTCTTATAATACTATGCTATCTCATTGAT
TTTTCGAGTTTGTCTACTCTCTTCTGTATTGCTTCTTTTTTTATTTCTAT
TTTTCTTTTTTTTTTTTTTTTTACTTCTTTTTTTTTTTTCTTGCTATTTT
TTCTATTTTTCTTTTTTTTACTTATTTTTCTTGTTGTATTCTTTATTTTG
TTTTTTTTTTTTTTTTTTTCGTACTCTTATTTTTCCCTTTTTTTTCTTTA
CTTCTTTTTTTAACTTAATTTTATTTCTCTTATTTTTCTTTTCTTTTTTT
CTTCTTCTATTCTTTCCTTTTTTTTCTCCTATTTTTTTCTTTTTTTTTTT
TTCATTATTTATTCTATTTTTTTCTCTTTTTCTTATCTTTCTTATTTTTT
ATTTTTTTCTTTCTTTTTCTTTCTTTCTTTTTTTTTTTTTTTTATTATTT
CTTTCTTTTTTTCTTTTTATTTTCTCTTTTTTACTTTTCTATTTTTTATT
ATTATTTTTTTTTTCTATTTCTTTTCTTTGTTCTTCTTTTTTTTTTCTTC
TTTCTTTTTTCTTTCTTTTTCTTTTTTTTTTTATTATATCTTCTTTTTTT
TT
TTTTTGTCCAAGTGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTTTTGATCTTTCCAAACTTTTATCATGAA
TGGGTGTTCCATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCA
TGTGGTTTTTGTCTTTGAGTTTGTTTATATAACCGGATTACATTGATGGA
TATTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGT
CAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCAGTTAGCGAGAATT
TTATTAAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTT
CTCTATCTTTATTGGATCTTTCTGTGGTTTAGGCATCAGAGTAATATTGT
TTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATCTTGTGAAAA
ATTTTGTGCACAACTGGAATTAGATCTTCTTTGAAGCTCTGATAGAACTC
TGCAATAAACCTGTCTGGTCCTGGCCTTTTTTTGGCTGGGTGACCATTCA
TAACTGCTTCTATTTCTCTAGAGCATATGATACTGTTTAGAAGGTCAACT
TGATCCTGATTCAACTTTCCCACCTGGTATCTGTCCAGAAATTTGTCCAT
TTCGTCCAGCTTTTCCATTTTTGCTGAGCATAGCCTTTTTGTATAATGAT
CTGATGGTGTTTTGGATTTCTTCAGGATCTGTTGTTATGTCTCCCTTTTC
ATTCCTGATTTTGTCATCTATTATTTTGTTCCTGTGTCTTCTATTCCTTC
TTATCTATTGGTTTAATTTATCTTTGTTTGATTTTCTCACATAACCCCTT
TCCTTCTTCGTTTAATTTCTTTTAAATACCTTTTTCTTGTTTTCTCCCAG
TTCTTGATTTCTCTCCTGTATTTTATTTTACTCCTTGTCTCTCAATTTCT
ATTTGTTCTGAATTTAGCTATCTCTTTTTTTTTTTTACCTTTTTTAATGT
GTTTGTCTCTTTCTGATTAACTTGTTGTTTCTTACTCCGTTTTTCTTTTT
TTATTTTTCTAATCCTTTAATTTCCCTTTCTTAATATTGTTTTTTTATTT
CTTTCTTTATTCTCNTAATATTTCTTATGTTTCTTTTCTTTCTTTTATTT
CTTTTTAATATNCTTTCTAATTTTCTTTATTTTATTCTTTTTCTTTTAAA
TCTTTATATTTTTATTTTATATTCTTTCAGATTTTCTCACTTATATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_k13.b1 MSMg01no093_k13.b1 CHROMAT_FILE:
MSMg01no093_k13.b1 PHD_FILE: MSMg01no093_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:48:36 2005
         (322 letters)



>mm_chr8_68180275_68180996
          Length = 722

 Score =  513 bits (265), Expect = e-150
 Identities = 307/321 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaactcacagatctttccatatgttttttttttctataggaaatggatccacaaaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 201 tgaactcacagatctttccatatgttttttttttctataggaaatggatccacaaatatt 260

                                                                       
Query: 61  tattgaacctatggctaggggagagtcaagggcttctctttctaccatgttgcaggcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattgaacctatggctaggggagagtcaagggcttctctttctaccatgttgcaggcatt 320

                                                                       
Query: 121 atctctttcctccaggtctgaaggaaagctttgctagtggaagaacttttggttagcaat 180
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 321 atctctttcctccaggtctgaaggaaagttttgccagtggaagaacttttggttagcaat 380

                                                                       
Query: 181 ttccccccttcagtgctttatataaagcagacccttatctttatttctgccagaaagtat 240
           |||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcctcccttcggtgctttaaataaagcagacccttatctttatttctgccagaaagtat 440

                                                                       
Query: 241 attaacagccttgtaagaatccctgtacatgcttttttttctcttttgcagctgccaaga 300
           ||||||||||||||||||||||||||||||| |   |  |||||||||||||||||||||
Sbjct: 441 attaacagccttgtaagaatccctgtacatgatgagtcctctcttttgcagctgccaaga 500

                                
Query: 301 ctttctttgcatttgtttttt 321
           |||||||||||||||||||||
Sbjct: 501 ctttctttgcatttgtttttt 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)