Query= MSMg01no094_e14.b1 MSMg01no094_e14.b1 CHROMAT_FILE:
MSMg01no094_e14.b1 PHD_FILE: MSMg01no094_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:52 2005
(225 letters)
>mm_chr8_62324870_62325494
Length = 625
Score = 350 bits (181), Expect = e-101
Identities = 212/225 (94%), Gaps = 6/225 (2%)
Strand = Plus / Plus
Query: 4 ggaattcataggctcccaccccaaaccaaggagcaattgacagtgatttcatgggttcag 63
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaattcataggctcccaccccaaaccaaggagcaattgacagggatttcatgggttcat 263
Query: 64 ggttg---gagtagcccattttctttaaaggtatagctgctccttgaaccactgtccatt 120
||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 ggttgaaggagtaa---attttctttaaaggtatagctgctccttgagccactgtccatt 320
Query: 121 aaatgtcctgccattttgatgaaaaggaacagcctaaattatagatgatgggttattaac 180
||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct: 321 aaatgtcctgccattttgatgaaaaggaacagcctaaattagagataatgggctattaac 380
Query: 181 ttaattatttaaaagggcatgtgaccttgaagggtaatctgtaaa 225
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaattatttaaaagggcatgtgaccttgaagggtaatctgtaaa 425
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space: 133056
Effective search space used: 133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no094_e14.g1 MSMg01no094_e14.g1 CHROMAT_FILE:
MSMg01no094_e14.g1 PHD_FILE: MSMg01no094_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:52 2005
(409 letters)
>mm_chr8_62441300_62442108
Length = 809
Score = 760 bits (393), Expect = 0.0
Identities = 405/409 (99%)
Strand = Plus / Minus
Query: 1 cagagactgaaacaacatgcacagattcagtatttggctctctgcaccagggtctctgag 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 773 cagagactgaaacaacatgcccagattcagtatttggctctctgcaccagggtctctgag 714
Query: 61 tgtgcattatggcttccagttgatagtttttatggagtaaacaaaagggtgagtctgaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tgtgcattatggcttccagttgatagtttttatggagtaaacaaaagggtgagtctgaac 654
Query: 121 ctggcattttccattgggctcttttccttctattggtttgtcttctttctcttgtttaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ctggcattttccattgggctcttttccttctattggtttgtcttctttctcttgtttaac 594
Query: 181 tgcaaaagactgattattagctcatagactgggcttagtttcttcttggtgcactcttgc 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 593 tgcaaaagactgattattagctcatagactgggtttagtttcttcttggtgcactcttgc 534
Query: 241 tttatttatgctgaggaagatgcaagggatctctgtagggactcattcatgagttcagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tttatttatgctgaggaagatgcaagggatctctgtagggactcattcatgagttcagat 474
Query: 301 ctgagtcctaaagactctgtcctttagagataggccccacctgctagtacaatacgtgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 473 ctgagtcctaaagactctgtcctttagagataggccccacctgctagtacaatacatgct 414
Query: 361 ttgaagtgatgcaattatctaggctattggagatcaatttaaaaaaatc 409
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 413 ttgaagtgatgcaattatctaggctattggagatcaattttaaaaaatc 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
