BAC Information

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BAC

Clone NameMSMg01-095P15
Chromosome8 (Build37)
Map Location 77,210,639 - 77,210,954
singlet/doubletsinglet
Overlap genenone
Upstream geneCrry-ps, LOC666146
Downstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095P15.T7 (MSMg01no095_p15.b1)MSMg01-095P15.TJ (MSMg01no095_p15.g1)
ACCAG312763AG312764
length699687
length of high quality
(start - end)
319 (36 - 354)286 (55 - 340)
definitionCHROMAT_FILE: MSMg01no095_p15.b1 PHD_FILE: MSMg01no095_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:10 2005CHROMAT_FILE: MSMg01no095_p15.g1 PHD_FILE: MSMg01no095_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAAA
ACCCCCACATTGTATTTCAAAGGAAAACCCTGGTCACTTCCTTTCTCTGC
TACAGCAAACCTGCTTTCTGTTAAATCCTCCACTAGATAAAGTGAAGGAA
GCACAGCGTTGGAGGAAACATGGGTTGGGTAAAGGCTGCAGTACATGCTC
AATCAATAATTGTTCAATAAAGAACGTAACAAGTAGGTGGATACATTAAG
TACTCTGAATATCTTCTCCTCTCAAGGTGAAGCTTCTGCCCCCTTACTCC
CCATTTCCTTGGTTTGTTTGTTTGTTGTTTGTTTTTTGCCTTGTCCAGAG
AGTCAAACTGAACTCACCCTCGACTAACTCTCCTACCAATTGATCAATTG
TAGGAGGTCTAAGAAAACAGGATACTGTGCTCTGAGGAGTCACTAAGGGG
CCCAGAATTTCCTGTACTGTGCCTTCATCTCTTATCAAAGTCAGGAAGCT
ATCATGCCCATGTGAAATAATAGTCTTTCCATTCAGACAAACAAACAAAA
CACAGCAAATTAATTGTACATCACTTTGGTAAGACCATACTGAGAAGACC
TTAATCAGGGACAGGTAGCAAGGGACCCTAGATAATTCCATCTACAGCTG
TGCGGCTATTGTGCGCAGATAAAACAAGTAAATGAATTATTTCTAATTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCATACAACGTATTTTGATCATATTCACCTCTTCCCCCACTTCTACA
ATATCCCAATATCCACCCCTCTTCCTTGCCTGCCCAATTTTGTGTCCTCA
TTAAAAAAAACAAACCATCTAGTTCAGTCTGTACTGTCCAAATGCTCTTG
GGTGTGTGGCTATCCACTGCAGTGCCATCTCCCAGGGCCCACACATGAAA
CACTGATGGGGCTCTGAATGTAGTTCAGTTGGTGGTGGGAGTGCCGAGTA
TGCATGAGCCCTGGGTTCAGTCTCCAGCACAGCACTAAATATTTGTGGTT
GACATCGCCTCGCTATTTCTGTACTCTGTAGGCAGAAACAGGAGAACCAC
AAATTCAAGAACTTCCTAGGTTACACAGGGAGTTTGCGATCAAACAAGGA
TATATGTGACTCTGTCATATAAGAAAAAGAAACGGCGGATGATAAGCGTA
AACACACCAGCAAGAATTCATTTTGAGATAGTCATCCCTCCATGCTCGCT
ATTTTCCTCATAACCAATTCTCCAAGGTCTATTCTTTCATCCAGGGGATA
AGGTATTCACTAGCCCTAAACCTCTGCACTCCCATTCTCCATTTGGTAGT
GGGACATCAGTGCCTCCTTGAAGTGACTCTTTGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_p15.b1 MSMg01no095_p15.b1 CHROMAT_FILE:
MSMg01no095_p15.b1 PHD_FILE: MSMg01no095_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:10 2005
         (319 letters)



>mm_chr8_77210435_77211154
          Length = 720

 Score =  565 bits (292), Expect = e-165
 Identities = 310/316 (98%), Gaps = 1/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaaaacccccacattgtatttcaaaggaaaaccctggtcac-ttcctttctct 63
           ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcagaaaccccccacattgtatttcaaaggaaaaccctggtcactttcctttctct 264

                                                                       
Query: 64  gctacagcaaacctgctttctgttaaatcctccactagataaagtgaaggaagcacagcg 123
           ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 gctacagcaaacctgatttctgttaaatcctccactagatgaagtgaaggaagcacagcg 324

                                                                       
Query: 124 ttggaggaaacatgggttgggtaaaggctgcagtacatgctcaatcaataattgttcaat 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 ttggaggaaacatgggttgggtaaaggctgcagtacatgctcagtcaataattgttcaat 384

                                                                       
Query: 184 aaagaacgtaacaagtaggtggatacattaagtactctgaatatcttctcctctcaaggt 243
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaagaatgtaacaagtaggtggatacattaagtactctgaatatcttctcctctcaaggt 444

                                                                       
Query: 244 gaagcttctgcccccttactccccatttccttggtttgtttgtttgttgtttgttttttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaagcttctgcccccttactccccatttccttggtttgtttgtttgttgtttgttttttg 504

                           
Query: 304 ccttgtccagagagtc 319
           ||||||||||||||||
Sbjct: 505 ccttgtccagagagtc 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space:   220410
Effective search space used:   220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)