BAC Information

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BAC

Clone NameMSMg01-096A05
Chromosome8 (Build37)
Map Location 37,523,796 - 37,524,008
singlet/doubletsinglet
Overlap genenone
Upstream geneThex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878
Downstream gene6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096A05.T7 (MSMg01no096_a05.b1)MSMg01-096A05.TJ (MSMg01no096_a05.g1)
ACCAG312791AG312792
length717700
length of high quality
(start - end)
249 (62 - 310)213 (70 - 282)
definitionCHROMAT_FILE: MSMg01no096_a05.b1 PHD_FILE: MSMg01no096_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:13 2005CHROMAT_FILE: MSMg01no096_a05.g1 PHD_FILE: MSMg01no096_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTAACGACTCCTATTTTCATAGAGGGCGGATTCTTTGCTC
TTTCCGAAACCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCT
TCTTGAGTTCTCTATATATGTTGGATATTACTCCCCTATCTGATTTAGGA
TAGGTAAAGATCCTTTCCCAATCTGTTGGCGGTCTTTTTGTCTTATTGAC
GGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGT
CAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTT
TCCCCTGTGTTTTTATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAG
TTTCAGTGCCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGA
CCTTACCCCAAGGAGATAAGTTTGGATCGATTCGCATTCTTCTACACGAT
AACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCA
CTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTG
GGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCT
CTATACCAGTACCATGCAGTTTTTATCCCATTTGCTCTGTAGCAAAGCTT
TATGTCTTGGCATGGTGATTCCGCCAGAAATTCCTTTTATCCTTGAGAAG
ACTTTTTGCTTTCCTAG
CGATGAAGTGTGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACTTATCGGGTAGTTCTGTAGGCAAATCTT
CACTTCAGCCAACAATGCACCAAACCCGCTGTGCAACTGCAGGGGGGTGT
CACTTGTGTCAATACACCCAGCTCACTTCTATTTCTACCCAGTGTGTCTC
TCTGCCTGTCTCCTCCCCTCCCCCAGATATGTGCACGTGCACACACAAAT
GGGTTTGTGTGTGTGTGTATACAAGTGCCCAGAGGGACCAGAAGGAGGTG
CTTCATCCCTTGGACATCTGTAGTTATAGGCATTTATGCCTGATGCTCCC
ATGCTGGGATATGACCTCTTGCTTCTCTGAGTGAGAGCCTTGAGTACTAT
TTACCATGGAAGCGCCTCTCCAGACCCTCTACCCACTCTTTATAATTGCT
CACCTTTAAAAGCAAACTAAGCATTTTACAATCACCACTTATGCACTCCC
CACAACTGTCTTCACAGAGAAGTCATTATGCCCATGTCACAGATGACGAA
AAGGCTCGAGCCAGGTCTCAATCTAAAAGATTTTAGTTACTGCTCAAAGA
CAGAATGATTGAATGATTGATTGAACGAATTAATGAACGATTGATTGAAA
GATAGAACGAACGAAAACAAGAACTATACTCCTCCTTACTTGACTTCTTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_a05.g1 MSMg01no096_a05.g1 CHROMAT_FILE:
MSMg01no096_a05.g1 PHD_FILE: MSMg01no096_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:13 2005
         (213 letters)



>mm_chr8_37523596_37524208
          Length = 613

 Score =  389 bits (201), Expect = e-113
 Identities = 210/213 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttatcgggtagttctgtaggcaaatcttcacttcagccaacaatgcaccaaacccgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 413 cacttatcgggtagttctgtaggcaaatcttcacttcagccaacaatgcagtaaacccgc 354

                                                                       
Query: 61  tgtgcaactgcaggggggtgtcacttgtgtcaatacacccagctcacttctatttctacc 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 353 tgtgcaactgcaggggggtgtcacttgtgtcaatacacccagttcacttctatttctacc 294

                                                                       
Query: 121 cagtgtgtctctctgcctgtctcctcccctcccccagatatgtgcacgtgcacacacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cagtgtgtctctctgcctgtctcctcccctcccccagatatgtgcacgtgcacacacaaa 234

                                            
Query: 181 tgggtttgtgtgtgtgtgtatacaagtgcccag 213
           |||||||||||||||||||||||||||||||||
Sbjct: 233 tgggtttgtgtgtgtgtgtatacaagtgcccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)