BAC Information

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BAC

Clone NameMSMg01-096G19
Chromosome8 (Build37)
Map Location 42,497,153 - 42,614,055
singlet/doubletdoublet
Overlap geneFrg1
Upstream geneZdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1, Pcm1, Asah1
Downstream geneLOC100039376, Gm1815, LOC671994, Zfp353, EG620772, LOC628212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096G19.T7 (MSMg01no096_g19.b1)MSMg01-096G19.TJ (MSMg01no096_g19.g1)
ACCAG313104AG313105
length804779
length of high quality
(start - end)
177 (135 - 311)331 (132 - 462)
definitionCHROMAT_FILE: MSMg01no096_g19.b1 PHD_FILE: MSMg01no096_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:46 2005CHROMAT_FILE: MSMg01no096_g19.g1 PHD_FILE: MSMg01no096_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,497,153 - 42,497,329)(42,613,725 - 42,614,055)
sequence
CCCCCCCCCTCCTCCCTTCCTTCTATTTAATACCATCTTCCCTATCTTCA
AAACCATCCCACTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTA
GAACGGCGGAATTCAAGTAGCCTTTCCTCAAAGGCCAGACACATGCTTAC
ATAGTTCTTGGTTGCAGGATCACTCCATGGGCTACGCTGTCAAAAAGCAG
CAGACTATAAGCAGGACTCACTGAAGCTGCCCATCACTAAGTCAGTCAGT
TTTGTCTTGTTTTGGTGGTGGTGGGACCCCCAACCCACCATCTCACTTAA
AAAACAGCTTACAGCATTCTAGTGCTGCAGGCCCGAAGGCTGAATCTGAG
AGCCACCCCAAACAAATAAAGGATCATGAATTTGTTTATTTTTAGAACTT
CCAAAGGCTTTGATGTGCACTCCCATTTACCACATGGCCGTATTTTCTTG
GCGCATTTCTACGTATGTACAACAAACGTATCCTGCAGCTGACAACTATG
CGACCCTCTGCATGCCCTATCTACATTGTTTCCAGTATATCACGCTCGCT
CTACTCCCCTCCCCTCACTTCTCTCCCCACTTCCTCCCGCACCCCCCCCA
TCTCCTTGCTTTACCCCCACCCCCATCTTCCATCTACACCTTGCTTTATG
GCCGTTCTCTCTGCCCCTTTCCCCATTTTCCCGTCTCTCTTTTTCCTTCC
CTTTGCCGTTTCCTCCCTTCCCCCCCTCTTCCCGTCGTCTTTACATATTT
CCCTCTTTAAATCGTAAATATTCCCCCCCCAACCCATTATCCCCCTCCCC
CCCC
NTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCTTCTCTTCACCCCACTAT
TCCTCTTTCCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGCCCAATTCCAGGATAGCCATGACTACA
AAGAGAAACTCTGTCTCAAAACTGCAACAACAAAACGATTTCTAAGAGCA
GCATACTAGGAAGTTAGTCAATAAATATTGGGTCCCTCATATTTACTTGG
CCCTGTCCTAACTAGTAGGTATGGGGCTATCAACAGATGTTTAGAGTCCC
TCTGCACACAGAACTCATCAAAAATATGTTAATGAGTTAAACCACCAAAA
GATTATGTCACTTTTGTGTAATTAAGAATAAAACTGCTTAGTATGCAAGA
ACATTTTCTTGCCCTGCTTCATATTTAGCGTGCTATACCTTTTAAGTTAG
CACCTACATGCTAGGAGAACATTTCCAAACAGATGAATGGTGACATGTCT
TAAACAAGATAAAATTCCCCTAACATCCACTATAAATAAGTCGAGGCAAG
TGCCAAATAGCCCATTTCAACCAATGAGCAACAACCTTGGACCATCTGGC
TCATAAATATGGGTCCAGTTATGAAGGGTCAAAAGGTAACATCTCCTGAC
AGAAGATATACCCCTAGAATGTTCTACTACTTTCTACGGTAGAGCTGGTG
CATGGCTCAGCTTAGAAGAGTCCTTCCTGCTCTTTTAAGTGTTTCTCAAT
TGGCCACATAAATTGACTCCTGTCCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_g19.b1 MSMg01no096_g19.b1 CHROMAT_FILE:
MSMg01no096_g19.b1 PHD_FILE: MSMg01no096_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:46 2005
         (177 letters)



>mm_chr8_42496953_42497529
          Length = 577

 Score =  335 bits (173), Expect = 1e-96
 Identities = 176/177 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagacacatgcttacatagttcttggttgcaggatcactccatgggctacgctgtcaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ccagacacatgcttacatagttcttggttgcaggatcactccatgggctaagctgtcaaa 260

                                                                       
Query: 61  aagcagcagactataagcaggactcactgaagctgcccatcactaagtcagtcagttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcagcagactataagcaggactcactgaagctgcccatcactaagtcagtcagttttg 320

                                                                    
Query: 121 tcttgttttggtggtggtgggacccccaacccaccatctcacttaaaaaacagctta 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgttttggtggtggtgggacccccaacccaccatctcacttaaaaaacagctta 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no096_g19.g1 MSMg01no096_g19.g1 CHROMAT_FILE:
MSMg01no096_g19.g1 PHD_FILE: MSMg01no096_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:46 2005
         (331 letters)



>mm_chr8_42613485_42614215
          Length = 731

 Score =  625 bits (323), Expect = 0.0
 Identities = 329/331 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggatagccatgactacaaagagaaactctgtctcaaaactgcaacaacaaaacgattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 caggatagccatgactacaaagagaaactctgtctcaaaactgcaacaacaaaacgattt 512

                                                                       
Query: 61  ctaagagcagcatactaggaagttagtcaataaatattgggtccctcatatttacttggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ctaagagcagcatactaggaagttagtcaataaatattgggtccctcatatttacttggc 452

                                                                       
Query: 121 cctgtcctaactagtaggtatggggctatcaacagatgtttagagtccctctgcacacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cctgtcctaactagtaggtatggggctatcaacagatgtttagagtccctctgcacacag 392

                                                                       
Query: 181 aactcatcaaaaatatgttaatgagttaaaccaccaaaagattatgtcacttttgtgtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aactcatcaaaaatatgttaatgagttaaaccaccaaaagattatgtcacttttgtgtaa 332

                                                                       
Query: 241 ttaagaataaaactgcttagtatgcaagaacattttcttgccctgcttcatatttagcgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 331 ttaagaataaaactgcttagtatgcaagaacattttcttgccctgcttcatatttagtgt 272

                                          
Query: 301 gctataccttttaagttagcacctacatgct 331
           | |||||||||||||||||||||||||||||
Sbjct: 271 gttataccttttaagttagcacctacatgct 241


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)