BAC Information

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BAC

Clone NameMSMg01-096H04
Chromosome8 (Build37)
Map Location 128,828,025 - 128,925,920
singlet/doubletdoublet
Overlap geneSlc35f3, LOC668434
Upstream geneSipa1l2, 4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891, Kcnk1
Downstream gene1810063B05Rik, EG619653, Irf2bp2, Tomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1, Pard3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096H04.T7 (MSMg01no096_h04.b1)MSMg01-096H04.TJ (MSMg01no096_h04.g1)
ACCAG313122AG313123
length788784
length of high quality
(start - end)
404 (130 - 533)306 (132 - 437)
definitionCHROMAT_FILE: MSMg01no096_h04.b1 PHD_FILE: MSMg01no096_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:48 2005CHROMAT_FILE: MSMg01no096_h04.g1 PHD_FILE: MSMg01no096_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,828,025 - 128,828,417)(128,925,617 - 128,925,920)
sequence
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCGNNCCCNCCTACGCAC
CCNACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAT
CCGCGGAATTCCTAACCATTTTGCCTCAGCTTAGTGCTGAGATTGTAGAC
ACCCACTGCTATCTCATGCTAACAGTGATGAATGGCGGCTCACCATATTA
CAGACTGTGGCCTATGGAAGCTTGTGCTATTAGCCCAGCTCCTCCTATAA
AAGCCCTGTAACACCATTCTACAAACAAGGAGTCTGAGGATCCCAGGACC
ATTAGAAGCAAGAAGGCTTGGATACAGATGCCAAAGACTTGAAATATCTG
GGTTCCGTTTAAGGAGCAAGAATTGCATGAGCTTGAGGCACTTGGTAGGT
GCTCAGTGAATTGCATGCCCTGAGGCTCCCACTGTGGTGTGTGTGACTCA
GTGATCTAGATCCCCATCCAGGCTCTGCGGATTGATGCCTACTGCTGATG
ACACTATTGGTGCCTCTGCCCCTCACAGCAGGTAGAAAGCAGAGATGGAG
TCAAGGTGTAACAAGAGATAAAATGTTCCCAGGTCCACCCCACAAAGATC
TGCTTCTTCCATTGAGGCCCTGCCTTCCAGAGTTCCCAGAGGCTTCCAAA
ATAATGCTATCATCTGTGTGCCACGGCTAATCTTTCCAAAATGGACCTGT
GTGGATGCTTCCTATTCTTAACTAAATCCTGAACAACATTACACACTAAT
ATTCCCACCTAAGTTCTCACTGAAACTCCTGCAGGCTA
TTTTTTTTTTTTTNTTTTNNTTTTTTCTTTACCNCCCCCNCCTCCATGCT
CCCACCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCCGCAATCCTTCCCT
CCTCCAGCCTCCTCTTCTTCATTAAGAAGTCTCCATTAAGAGGGAAGCCT
GCCTGCCTCACTCAGGTTGTGCCCAGGAATGTCTGGCCATGCTCACTACC
TTGATTTTCAAGAAACTAAAATTTCTGAAAATATTTTTACTACTGTTAAA
GCTTTTGGGCTGGAAAGATAGATTTATGTTCTCTAAGACGTGGAAGATAC
AGGGATAAGAGATTTGAAGGAAATCGAGAACTTCGTTGCACATATTAGTG
TGATACACTTATTGGGGATGCTAGGGCATTTAATACGTGACTCGGGAATT
TAGAAGAGGTAAAAGCTTAAGATGTGCCCCTGAGAATCTCCACTCCACCA
AAATAGCCTTTATAATAAAATGTGCTGGGAGCTTCATACGTGGTCCAGTT
GGCAGAGTGCTTGCCTGGTGTGCATGAATCCCTGGGTTCCATTTCTTGTA
TTATATAAACTAAACTAGCAAGGTAGCAGGCACCTATTATTTCCATATTC
GGGAGATGGGACTGTGAAATTTAGGACTTCTGAGTTCTCCACTGTTAACT
ATCCTCCGAAGCTCCATCTATTCTGATACTGTTATTTGTAACGGGCTGTA
CATGCCTGCTTTCCCAATAATTTTGGATGTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_h04.b1 MSMg01no096_h04.b1 CHROMAT_FILE:
MSMg01no096_h04.b1 PHD_FILE: MSMg01no096_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:48 2005
         (404 letters)



>mm_chr8_128827825_128828628
          Length = 804

 Score =  721 bits (373), Expect = 0.0
 Identities = 388/393 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagtgctgagattgtagacacccactgctatctcatgctaacagtgatgaatggcggc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 cttagtgctgagattgtagacacccactgctatctcaggctaacagtgatgaatggcggc 260

                                                                       
Query: 61  tcaccatattacagactgtggcctatggaagcttgtgctattagcccagctcctcctata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaccatattacagactgtggcctatggaagcttgtgctattagcccagctcctcctata 320

                                                                       
Query: 121 aaagccctgtaacaccattctacaaacaaggagtctgaggatcccaggaccattagaagc 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 aaagccctgtaacaccattctacaaacaaggagtctgaggctcccaggaccattagaagc 380

                                                                       
Query: 181 aagaaggcttggatacagatgccaaagacttgaaatatctgggttccgtttaaggagcaa 240
           ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 aagaaggcttggatacagatgtcaaagacttgaaatatctgagttccgtttaaggagcaa 440

                                                                       
Query: 241 gaattgcatgagcttgaggcacttggtaggtgctcagtgaattgcatgccctgaggctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaattgcatgagcttgaggcacttggtaggtgctcagtgaattgcatgccctgaggctcc 500

                                                                       
Query: 301 cactgtggtgtgtgtgactcagtgatctagatccccatccaggctctgcggattgatgcc 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 cactgtggtgtgtgtgactcagtgatctagatccccatccaggctctggggattgatgcc 560

                                            
Query: 361 tactgctgatgacactattggtgcctctgcccc 393
           |||||||||||||||||||||||||||||||||
Sbjct: 561 tactgctgatgacactattggtgcctctgcccc 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no096_h04.g1 MSMg01no096_h04.g1 CHROMAT_FILE:
MSMg01no096_h04.g1 PHD_FILE: MSMg01no096_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:48 2005
         (306 letters)



>mm_chr8_128925543_128926248
          Length = 706

 Score =  572 bits (296), Expect = e-168
 Identities = 302/304 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgccgcaatccttccctcctccagcctcctcttcttcattaagaagtctccattaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tctgccgcaatccttccctcctccagcctcctcttcttcattaagaagtctccattaaga 319

                                                                       
Query: 61  gggaagcctgcctgcctcactcaggttgtgcccaggaatgtctggccatgctcactacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gggaagcctgcctgcctcactcaggttgtgcccaggaatgtctggccatgctcactacct 259

                                                                       
Query: 121 tgattttcaagaaactaaaatttctgaaaatatttttactactgttaaagcttttgggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgattttcaagaaactaaaatttctgaaaatatttttactactgttaaagcttttgggct 199

                                                                       
Query: 181 ggaaagatagatttatgttctctaagacgtggaagatacagggataagagatttgaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ggaaagatagatttatgttctctaagacgtggaagatacagggataagagatttgaagga 139

                                                                       
Query: 241 aatcgagaacttcgttgcacatattagtgtgatacacttattggggatgctagggcattt 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 aatcgagaacaacgttgcacatattagtgtgatacacttattggggatgctagggcattt 79

               
Query: 301 aata 304
           ||||
Sbjct: 78  aata 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)