BAC Information

Click to search

BAC

Clone NameMSMg01-096N23
Chromosome8 (Build37)
Map Location 53,532,520 - 53,532,834
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
Downstream geneLOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096N23.T7 (MSMg01no096_n23.b1)MSMg01-096N23.TJ (MSMg01no096_n23.g1)
ACCAG313445AG313446
length740751
length of high quality
(start - end)
321 (42 - 362)200 (72 - 271)
definitionCHROMAT_FILE: MSMg01no096_n23.b1 PHD_FILE: MSMg01no096_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:23 2005CHROMAT_FILE: MSMg01no096_n23.g1 PHD_FILE: MSMg01no096_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAA
TTCATTAAGTTCTTCCCTAAAATATACTTATGGAATAAACCTACATATAT
TTACTAGCCAGAAAACTTCAATATTAAAAAATGTGCCTTTTAATTGCAAA
AAATGTATTATGATTTTCTCCCTTAATATTATATTCTTTCCATAATGTAT
AATTGCAAGCACTTCCTCCATACTATCATACAGTCTACCTTCTGTGCAGG
ACTTAAATACAGACTTAGACAATTCCTTTTATACAGAAATATAACTATAG
ATTTTCATACTACTCTCTAAGAAGCATATGTCCAAGCTTGTGTGTTCACT
TATGGGAGAATCCATGACATGGATTGGCAGCCATTAGCATAGTGGTTGGA
ATAAAATGAACATTCACAGAAGAAAATTTTATTATTCATTCCTAAAACTC
AGTGTCATACGTAAATGCTATGCTATCTTACCTCTTGCATTTGCAATTGA
TTTACTTGTGATACAAACTAATTCTCAGCATGCTCTCCGTTTCCTGACAA
TAACAAGGGAAAGCATGAACAGGGAAGTTTGTTATTTACCACCCACAGCT
CAATGCCCCATATAATCAAATCTTTTTGTCAGAGCATCCTGCCACATAAT
CAGATCGTGTGAATTTGCCCATGCAATTTTACTAATATACACTCCTTTAA
AGCCTCAGTAACCCTGCTATATCCCATTCTTCTCTCCTGA
TGATAGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTCTCGCACCTGCGTACAAGGCTTGTTT
ACTAGTTAGGCACAGCGGAGGCCCGCGCCATCTTATAATGGCGATTGCTG
GCGGCACGCACGGCTCTCCTCAGAGATTACTGGCGGCACGCACGCGATTG
CTCGCAGCATGTACTGGCTCTCCACATGCCTTCATCACAGACACACACAC
ACACACACACACACACACACACACACACACACACACACACACTTACACCC
ATAGACGAGTTTTGAGACCTATCTGAACATGAATCCTCACAAACAAAGCT
ACATACTCCTATTATTTTTCACATACGCACACAGGCACACACACATTCAC
AACACACATATACCTCCCACCAATACGGACTTTAAATATTCCATTTACCT
TCACAAATAATCACGGTTCATACTTGATTACAAAACTAACTATCCACTTA
CTCCTAATAACCTTCCCTAACATTCCAATTATTGTTTTAGGCAGTGTTTA
CCCACCTTATTAAAACTCTCAAATTCCTATAAAAACGACCCCCCGGCCAT
ACGTATACAGATGCTACCCTCAAGTACCCTAACCGATCTTTTCCGATCTT
ACGCTTCCCACTTCCCAGACCCGTTTCCACCGGCGCCTGCATCCCCCGCC
TCCCTACCTGCTTCCCCATCCCACATTTACCCACCACTCGCTTCCTCCTC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_n23.b1 MSMg01no096_n23.b1 CHROMAT_FILE:
MSMg01no096_n23.b1 PHD_FILE: MSMg01no096_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:23 2005
         (321 letters)



>mm_chr8_53532314_53533034
          Length = 721

 Score =  540 bits (279), Expect = e-158
 Identities = 307/317 (96%), Gaps = 4/317 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcattaagttcttccc-taaaatatacttatggaataaacctacatatatttacta 65
           |||||||||||||||  ||| ||  |||||||||||||||||| ||||||||||||||||
Sbjct: 521 gaattcattaagttc--cccataggatatacttatggaataaatctacatatatttacta 464

                                                                       
Query: 66  gccagaaaacttcaatattaaaaaatgtgccttttaattgc-aaaaaatgtattatgatt 124
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 463 gccagaaaacttcaatattaaaaaatgtgccttttaattgcaaaaaaatgtattatgatt 404

                                                                       
Query: 125 ttctcccttaatattatattctttccataatgtataattgcaagcacttcctccatacta 184
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 403 ttctcccttaatattatattctttccataatgtatatttggaagcacttcctccatacta 344

                                                                       
Query: 185 tcatacagtctaccttctgtgcaggacttaaatacagacttagacaattccttttataca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tcatacagtctaccttctgtgcaggacttaaatacagacttagacaattccttttataca 284

                                                                       
Query: 245 gaaatataactatagattttcatactactctctaagaagcatatgtccaagcttgtgtgt 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 283 gaaatataactatagattttcatactactcgctaagaagcatatgtccaagcttgtgtgt 224

                            
Query: 305 tcacttatgggagaatc 321
           |||||||||||||||||
Sbjct: 223 tcacttatgggagaatc 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)