BAC Information

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BAC

Clone NameMSMg01-096P12
Chromosome8 (Build37)
Map Location 40,441,847 - 40,442,154
singlet/doubletsinglet
Overlap geneEG621335
Upstream geneTusc3, LOC100038974, LOC632066
Downstream geneLOC434304, Msr1, EG621431, LOC100039072, LOC666959, EG632166, Fgf20, 2900075B16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096P12.T7 (MSMg01no096_p12.b1)MSMg01-096P12.TJ (MSMg01no096_p12.g1)
ACCAG313519AG313520
length791785
length of high quality
(start - end)
309 (126 - 434)339 (129 - 467)
definitionCHROMAT_FILE: MSMg01no096_p12.b1 PHD_FILE: MSMg01no096_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:32 2005CHROMAT_FILE: MSMg01no096_p12.g1 PHD_FILE: MSMg01no096_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTTTTNTNTTTTNNNTTCCCTCCCCCCCCCCCCCCCCACCCCCCCN
CCCTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAACCGCGG
AATTCTTTGAATTCCTTTCTCCTTGAATTGCTGAACAAACAAGGCTCTAA
GAAAAAGAATGTTAGACTTGGCTTTAAAAAGCCTAGGCCAGTAGTGATTG
ACCTTTTAGTGTAATGCCTGAGAATCAAAAAAAAAACTAAATCTTCTAGC
AGCACAAGTAAATATATTTGTTTAGATGCTAACACAAAAGGAGAAAATCT
AGACAGACAGCAGTTCTAGAGGTTTCATATTCATAATGCTGATATAATAT
ACAACGTAACGTAGGTTAAGATTAAAAAGTTACTAAATTTACCAACAGAA
AGCCCACATAGAGAAAGTTTCATATGACATTAACAAGAGGCTCATGAAAC
CTTCACCCATGTCTTATGTTCCCACCAATCAGTAGTGCTTGTCAAATTCT
AGATTGGTATCGGTTTGCTATTCTTGATTTTGCCATACTAAATGCAACCT
CGGATTATTCATCCAACTTAATTTAAGTCCTTTCTTAACTACTTAACACC
CCCCCAGAAGTGTTCTACAGATCTTGTTAGCACATCATAAATGTTGTCAT
CGCTTCATTTCTCATAGATGTCCTCCTCACTTTAAGTGCTAATAAAAGAT
CTTCCCCTTTACTAATAATCAACATCTATTGCCCCCTGCACCCCCTACTC
ATGAACTAATCCAGGCACCCACTCATCTTCTAGGTCCTCAA
TTTTTTTTTTTTTTTTTTNTTTCTTTTTCTCCCCCCCCCTTCCCTCTTCC
NNNNCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGCCAGAGGAATACTGAATGG
CTGAGAAGCACCTGAAAAAAGTTCAGCATCCTTAATCATCAGGGAAATGC
AAACCAAAACAAACCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATGAAAAATTCAGGTGACAGCAGATGTTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCTAGCTTGTACAACCACTCTAGA
AATCAGTCTGTCAGTTCCTCAAAAATTTGGACATAGTACTACTGGAGGAT
CCTGCAATACCTCTCCTGAGCATATATCCAGAAGATGTCTCAACTGGTAA
GAAGGACACATGCTCTACTATGTTCATAGCCAGCCTTATTTATAATAGCC
CAGTAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACCGA
ATATGTGCTACATTTACACCTATGCAGTACTACCCATGTATTATCACGAA
TGAACTTATTCCCATCCCTAATCAAATGCCTGTATCCTGTAGGGCCCCCT
CCTGAACTGACTAACCCTTCCTTCCAAATAACTTGCCCCCCGCGCCCTCC
CTGAATCACCGGACATCATCTCCTACACTCTACAAACCCCTCTATATTCT
ATTTTATTTGCCAATCTCATTAATCCCCTCCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_p12.b1 MSMg01no096_p12.b1 CHROMAT_FILE:
MSMg01no096_p12.b1 PHD_FILE: MSMg01no096_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:32 2005
         (309 letters)



>mm_chr8_40441647_40442355
          Length = 709

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattgctgaacaaacaaggctctaagaaaaagaatgttagacttggctttaaaaagccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattgctgaacaaacaaggctctaagaaaaagaatgttagacttggctttaaaaagccta 260

                                                                       
Query: 61  ggccagtagtgattgaccttttagtgtaatgcctgagaatcaaaaaaaaaactaaatctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccagtagtgattgaccttttagtgtaatgcctgagaatcaaaaaaaaaactaaatctt 320

                                                                       
Query: 121 ctagcagcacaagtaaatatatttgtttagatgctaacacaaaaggagaaaatctagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagcagcacaagtaaatatatttgtttagatgctaacacaaaaggagaaaatctagaca 380

                                                                       
Query: 181 gacagcagttctagaggtttcatattcataatgctgatataatatacaacgtaacgtagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacagcagttctagaggtttcatattcataatgctgatataatatacaacgtaacgtagg 440

                                                                       
Query: 241 ttaagattaaaaagttactaaatttaccaacagaaagcccacatagagaaagtttcatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaagattaaaaagttactaaatttaccaacagaaagcccacatagagaaagtttcatat 500

                   
Query: 301 gacattaa 308
           ||||||||
Sbjct: 501 gacattaa 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)