Query= MSMg01no098_e05.b1 MSMg01no098_e05.b1 CHROMAT_FILE:
MSMg01no098_e05.b1 PHD_FILE: MSMg01no098_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:18 2005
(447 letters)
>mm_chr8_44324950_44325796
Length = 847
Score = 750 bits (388), Expect = 0.0
Identities = 418/438 (95%), Gaps = 16/438 (3%)
Strand = Plus / Plus
Query: 5 gaattctgtctaaacctgcctctgaacttctgggatcaaaggtgtaattcaccatacctg 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtctaaacttgcctctgaacttctgggatcaaaggtgtaattcaccatacctg 264
Query: 65 gcagcacaccataatctgtatattggtcttcagaatgaatttaagggcttcttaatgtca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcagcacaccataatctgtatattggtcttcagaatgaatttaagggcttcttaatgtca 324
Query: 125 tgtaacatgggcatacactgttttatttttttatttactgtatcacccaggctgtcccca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtaacatgggcatacactgttttatttttttatttactgtatcacccaggctgtcccca 384
Query: 185 aattatggagataaattgtcttcctgcttcagcctccagagtgtctgagactatacttgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattatggagataaattgtcttcctgcttcagcctccagagtgtctgagactatacttgg 444
Query: 245 ctctatattttattcatatatatatatatatatatatatatatatatatatatatatata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctctatattttattcatatatatatatatatatatatatatatatatatata-------- 496
Query: 305 tatatatacatacatatatatatacacacacatacacaccaaaatctctctgatggttga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 --------catacatatatatatacacacacatacacaccaaaatctctctgatggttga 548
Query: 365 caagacactctttgtatagatagtatttcaaacattgtttcttagatatcttttggtttg 424
||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 549 caagaaattctttgtatagatagtatttcaaacattgtttcttaggtatcttttggtttg 608
Query: 425 gttaggtttgtttgtttg 442
||||||||||||||||||
Sbjct: 609 gttaggtttgtttgtttg 626
Score = 85.8 bits (44), Expect = 5e-21
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 260 atatatatatatatatatatatatatatatatatatatatatatatatatat 311
|||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 511 atatatatatgtatgtatatatatatatatatatatatatatatatatatat 460
Score = 85.8 bits (44), Expect = 5e-21
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 261 tatatatatatatatatatatatatatatatatatatatatatatatatata 312
||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 512 tatatatatatgtatgtatatatatatatatatatatatatatatatatata 461
Score = 72.3 bits (37), Expect = 6e-17
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 269 tatatatatatatatatatatatatatatatatatatatatatacatacatat 321
||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||
Sbjct: 512 tatatatatatgtatgtatatatatatatatatatatatatatatatatatat 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 167
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 10
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_e05.g1 MSMg01no098_e05.g1 CHROMAT_FILE:
MSMg01no098_e05.g1 PHD_FILE: MSMg01no098_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:19 2005
(283 letters)
>mm_chr8_44430177_44430861
Length = 685
Score = 485 bits (251), Expect = e-142
Identities = 275/283 (97%), Gaps = 4/283 (1%)
Strand = Plus / Minus
Query: 1 ctttcatttc-aaactatgtttctccaaaattactgttaatttttctcttctaataactt 59
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctttcatttcaaaactatgtttctccaaaattactgttaatttttctcttctaataactt 306
Query: 60 cctcagcacagaaaggaggagcattaaatcctaagtgctttgtcagaacagctttgtaat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cctcagcacagaaaggaggagcattaaatcctaagtgctttgtcagaacagctttgtaat 246
Query: 120 ttcagga-ttttttttttacagcactctaaacctgtttaaaataaaaagaaagaaagaaa 178
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttcaggatttttttttttacagcactctaaacctgtttaaaataaaaagaaagaaagaaa 186
Query: 179 gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaacgaaagga- 237
||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct: 185 gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaa-gag 127
Query: 238 agagagagagagatgtagggagggagggatggagagagagaga 280
||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 126 agagagagagagagggagggagggagggatggagagagagaga 84
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 685
Length adjustment: 9
Effective length of query: 274
Effective length of database: 676
Effective search space: 185224
Effective search space used: 185224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
