BAC Information

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BAC

Clone NameMSMg01-098F15
Chromosome8 (Build37)
Map Location 49,123,184 - 49,238,754
singlet/doubletdoublet
Overlap geneLOC100040113, Dctd
Upstream geneEnpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2
Downstream geneOdz3, 2900073C17Rik, LOC100039866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098F15.T7 (MSMg01no098_f15.b1)MSMg01-098F15.TJ (MSMg01no098_f15.g1)
ACCAG314556AG314557
length719703
length of high quality
(start - end)
457 (64 - 520)448 (57 - 504)
definitionCHROMAT_FILE: MSMg01no098_f15.b1 PHD_FILE: MSMg01no098_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:26 2005CHROMAT_FILE: MSMg01no098_f15.g1 PHD_FILE: MSMg01no098_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,123,184 - 49,123,640)(49,238,314 - 49,238,754)
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGACCTGCCTCCTTATGTACGGGAAGCAAGGGCTCTCTACCTGTGAC
CCATAGAGCACCAGACGCAGGCAGTTATAACTAAGTAGAAAACCTTTTCT
CATTGTTGATGCCCGAGGCCTTAGTGGTATTGTTAGTAGGAAACTATGTA
AGAACTTAACTGTGACCAAGTCTCCCTAGTCATGATGCAGCAATGAGGAG
ATTGTCATCAATTAACGCAACAGGCCACCATTTTCCTCTAAATGGAGCGT
GGGGATACCGCCATTATCTAAAGACCAAAGCCAATGTAATTTGAATTTTA
CCTTTAGGTTGTTGGCTGAAATGTGAAATTTGACTTGGCCCTTCAGTTTC
TTTATTTCTATTATTCTAACCCAAAGTGTTTCTCCTATGCCATCTTTCTT
TTTTGAGTTAACTAAGCCAGCAGGATCAACTTATATACCCAGAGGGCAGA
ACTTTCAAGCAGCCTCTTAGTTAACACAACACAATAAAGTATGCTCCCAA
CCTCCTGTGGGCCTTGCTAAGAGCTTGTATACTGCATACATATACCTTCA
GAACATACATCCTTGGATCCATATGGCTCACGAAGCATCTTGTGATTATG
CGATCTGAAGCTTGGGACCCGCTTGTATCCTGGTGTTGCTAGTAGCTAAA
TATGGACGGCTTCCCTAAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCTACCTCCTGCTCTCCCCTCCGCTGTTTGAAATAGAAGTAGTT
ACTTAATCAAATAAGGGGTGTTCCGATGGGCAGCGCAGGGGCTGGATTGC
CTTCCACGTTGATTGGTTGGATCGGGTGTTTTTTGAGAAAGGGTCTCACT
ATGTCGTTCAGAATGGCCTGGAACTCAGGATCCGGAATGCTGGGATCACA
GGTGACAACTTTTTAATGCCACATTGCATCTCCCCAGTCTTGCTTGTCCT
GTATGTTAAGATAGAGTGGGAAGAAGATGGAAGAGCTAGTGGTTATTACT
CCTGCTATCTGTAGGAGCAAACGAAAACTCAAGAGCGCCGCCCAAGCCTC
CCTCTTGGAAGGTGTCACTTGGTCGGAACTCCCTGAACTGTTCCTCCTCC
ATTTCTGTCTCTTTTAATAACACACGGGGAATCAACGTCACAAAACATGC
ACGCACCACACTCCCAGTATGGAGTTTCCTCTAAGTAACACTTTTCTGAT
TCATTTTATTAAGAAATTAAATTGCTGATCCATTTGAACTCTCATTAATA
GATATTAAACGTTGCTTGTTATAAAAATGCTAATAAATCATTACTTTTTT
TGTTGATAGCTCTTTTTTTCTCTCTTGAACCTAACCACCACATGGCTAAC
ATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_f15.b1 MSMg01no098_f15.b1 CHROMAT_FILE:
MSMg01no098_f15.b1 PHD_FILE: MSMg01no098_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:26 2005
         (457 letters)



>mm_chr8_49122984_49123840
          Length = 857

 Score =  830 bits (429), Expect = 0.0
 Identities = 450/457 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttatgtacgggaagcaagggctctctacctgtgacccatagagcaccagacgcaggca 60
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ccttatgcacaggaagcaagggctctctacctgtgacccatagagcaccagacgcagaca 260

                                                                       
Query: 61  gttataactaagtagaaaaccttttctcattgttgatgcccgaggccttagtggtattgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttataactaagtagaaaaccttttctcattgttgatgcccgaggccttagtggtattgt 320

                                                                       
Query: 121 tagtaggaaactatgtaagaacttaactgtgaccaagtctccctagtcatgatgcagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtaggaaactatgtaagaacttaactgtgaccaagtctccctagtcatgatgcagcaa 380

                                                                       
Query: 181 tgaggagattgtcatcaattaacgcaacaggccaccattttcctctaaatggagcgtggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaggagattgtcatcaattaacgcaacaggccaccattttcctctaaatggagcgtggg 440

                                                                       
Query: 241 gataccgccattatctaaagaccaaagccaatgtaatttgaattttacctttaggttgtt 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 gataccgccattatctaaagaccaaagccaatgtaatttgaattatacctttaggttgtt 500

                                                                       
Query: 301 ggctgaaatgtgaaatttgacttggcccttcagtttctttatttctattattctaaccca 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggttgaaatgtgaaatttgacttggcccttcagtttctttatttctattattctaaccca 560

                                                                       
Query: 361 aagtgtttctcctatgccatctttcttttttgagttaactaagccagcaggatcaactta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtgtttctcctatgccatctttcttttttgagttaactaagccagcaggatcaactta 620

                                                
Query: 421 tatacccagagggcagaactttcaagcagcctcttag 457
            ||||||||||||||||||||||||| ||||||||||
Sbjct: 621 gatacccagagggcagaactttcaagtagcctcttag 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no098_f15.g1 MSMg01no098_f15.g1 CHROMAT_FILE:
MSMg01no098_f15.g1 PHD_FILE: MSMg01no098_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:26 2005
         (448 letters)



>mm_chr8_49237916_49238763
          Length = 848

 Score =  768 bits (397), Expect = 0.0
 Identities = 430/441 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctacctcctgctctcccctccgctgtttgaaatagaagtagttacttaatcaaataagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 tctacctcctgctctcccctccgctgtttgaaatagaagtagttacttaatcaaataagg 780

                                                                       
Query: 61  ggtgttccgatgggcagcgcaggggctggattgccttccacgttgattggttggatcggg 120
           ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 779 ggtgttccgatgggcagtgcaggggctggattgccttcgacgttgattggttggatcggg 720

                                                                       
Query: 121 tgttttttgagaaagggtctcactatgtcgttcagaatggcctggaactcaggatccgga 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 719 tgttttttgagaaagggtctcactatgtcgttcagagtggcctggaactcaggatccgga 660

                                                                       
Query: 181 atgctgggatcacaggtgacaactttttaatgccacattgcatctccccagtcttgcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 atgctgggatcacaggtgacaactttttaatgccacattgcatctccccagtcttgcttg 600

                                                                       
Query: 241 tcctgtatgttaagatagagtgggaagaagatggaagagctagtggttattactcctgct 300
           ||||| |||  ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 599 tcctggatgcgaagatagagtgggaagaagatggaagagctagtggttattagtcctgct 540

                                                                       
Query: 301 atctgtaggagcaaacgaaaactcaagagcgccgcccaagcctccctcttggaaggtgtc 360
           |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 539 atctgtaggagcaaacgaaaactcaagagcaccgcccaaccctccctcttggaaggtgtc 480

                                                                       
Query: 361 acttggtcggaactccctgaactgttcctcctccatttctgtctcttttaataacacacg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 479 acttggtcggaactccctgaactgttcctcctccatttctgtctcttttaataacacaca 420

                                
Query: 421 gggaatcaacgtcacaaaaca 441
           ||||||||| |||||||||||
Sbjct: 419 gggaatcaaggtcacaaaaca 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)