BAC Information

Click to search

BAC

Clone NameMSMg01-098M13
Chromosome8 (Build37)
Map Location 62,963,166 - 62,963,604
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098M13.T7 (MSMg01no098_m13.b1)MSMg01-098M13.TJ (MSMg01no098_m13.g1)
ACCAG314877AG314878
length702683
length of high quality
(start - end)
589 (45 - 633)439 (54 - 492)
definitionCHROMAT_FILE: MSMg01no098_m13.b1 PHD_FILE: MSMg01no098_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:00 2005CHROMAT_FILE: MSMg01no098_m13.g1 PHD_FILE: MSMg01no098_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGCCGAACGCCGAATGGCCGAGAAGCACCTGAAAAAATGTT
CAGTATCCTTATTCATCAGGGAAATGCAAATCAAAACAAACCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAAAACACTCCTCCATTGTTGGTGGGATT
GCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAA
TTGGCCATAGTACTACTGGAGGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGTTCTAACTGGTAAGAAGGACACATGCTCCATTATGTTCG
TAGCAGCCTTATTTATAATAGCCAGAAGCTGTAAAGAACCGAGATGTCCC
TCTACAGAGGAATGGATACAAAAAAATGTGGTACATTTACACAATAGAGC
ACTACTCAGCTACTTAAAAGAATTAATTTATGAAATTCCTAGGCAAATGG
ATAGACCTGGAGAGTATCATCCTGAGTGAGGTAACCCAATCACTAAAGAA
CTCACATTATATGTACTCACTGATAAGTGAATATTACCCTAGAATCTTAG
AATACCCAAGATACAAGATACCAGTTGTACAACACATGAAACTCAAGAAG
AA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXACTACATCCCTACCCCTCTAGGTGTTGGTGGGTGCTTTGGGGACAGG
AGTTATTGGATTTGGCAATGTAGCTACTGACAAGTGCCCCATACTTCAAG
GGATAGCTCCACAGGCAAGTGCACATAAAGAAGAAAGAGAGTTGATTTGA
TGAGAATGAAAGGAGAATAGGTGGGGTAAGGTAAATACAATCAGAATGTA
CTGTCTGTGTGTTTGTGTGTTATATATGAAACTGTCATGAAATAAATTTA
GTTTTTTTTTAAAGTACAAGTATGAAAGTCATGTCTATATTTGGAAAATA
TTTGTCATATATGCAAAGCTACCCACAAGTCATAGTATATTCATGCATAT
ACATATAGAAGCATTACTTAAAGCTTCTATCTAGCTTCCAGAATTAATTT
CATGAAAACTGCCTCATTATTTCTTCCATCATTATTTCAGAACAAGACAC
TAAATATTTACAAAATATTTAAAAAGAGACAAAGCTAATAAAAACAAAAC
ACAAAAAAAACTTAGAATTTATGGAACCAGAACTAAGATAATTAAGCAAA
TATGGAAACAGATTATTTGAGCAGCCACCTCTGACATTTCAGCTCCTCTA
ACAGATGGTTCCAAAGTCCGAAAGAACCCAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_m13.g1 MSMg01no098_m13.g1 CHROMAT_FILE:
MSMg01no098_m13.g1 PHD_FILE: MSMg01no098_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:00 2005
         (439 letters)



>mm_chr8_62962966_62963804
          Length = 839

 Score =  833 bits (431), Expect = 0.0
 Identities = 437/439 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actacatccctacccctctaggtgttggtgggtgctttggggacaggagttattggattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actacatccctacccctctaggtgttggtgggtgctttggggacaggagttattggattt 260

                                                                       
Query: 61  ggcaatgtagctactgacaagtgccccatacttcaagggatagctccacaggcaagtgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaatgtagctactgacaagtgccccatacttcaagggatagctccacaggcaagtgca 320

                                                                       
Query: 121 cataaagaagaaagagagttgatttgatgagaatgaaaggagaataggtggggtaaggta 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catagagaagaaagagagttgatttgatgagaatgaaaggagaataggtggggtaaggta 380

                                                                       
Query: 181 aatacaatcagaatgtactgtctgtgtgtttgtgtgttatatatgaaactgtcatgaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatacaatcagaatgtactgtctgtgtgtttgtgtgttatatatgaaactgtcatgaaat 440

                                                                       
Query: 241 aaatttagtttttttttaaagtacaagtatgaaagtcatgtctatatttggaaaatattt 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatttagtttttttttaaagtagaagtatgaaagtcatgtctatatttggaaaatattt 500

                                                                       
Query: 301 gtcatatatgcaaagctacccacaagtcatagtatattcatgcatatacatatagaagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcatatatgcaaagctacccacaagtcatagtatattcatgcatatacatatagaagca 560

                                                                       
Query: 361 ttacttaaagcttctatctagcttccagaattaatttcatgaaaactgcctcattatttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttacttaaagcttctatctagcttccagaattaatttcatgaaaactgcctcattatttc 620

                              
Query: 421 ttccatcattatttcagaa 439
           |||||||||||||||||||
Sbjct: 621 ttccatcattatttcagaa 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)