BAC Information

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BAC

Clone NameMSMg01-098N22
Chromosome8 (Build37)
Map Location 58,277,109 - 58,277,574
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916
Downstream geneAdam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098N22.T7 (MSMg01no098_n22.b1)MSMg01-098N22.TJ (MSMg01no098_n22.g1)
ACCAG314939AG314940
length686777
length of high quality
(start - end)
529 (43 - 571)468 (139 - 606)
definitionCHROMAT_FILE: MSMg01no098_n22.b1 PHD_FILE: MSMg01no098_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:06 2005CHROMAT_FILE: MSMg01no098_n22.g1 PHD_FILE: MSMg01no098_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATCGAAAGAGGATCCGCGGAATTCCACCTTACCTTTAAAGATGAG
TTAATGTCAATGTCCCAAATTATTCCACAAATCAGGAGAAGGAATATTGT
TCAATTCATTTTGAGTCCACAGTTACCAGAAACGTAAACCACGTAAAAAG
ACCCAAGAAAGAACGAGATTACAGACCGATTTCTCTTATGAACATAGAAG
CAAGATTTCTTATTAAAATACATGAAAAGTGAATCCAAGAACACATCAAA
AAGACCATCTATCATGATCAAATAGGCTTCATTCAAGAGATTTGGGGATG
TAACAACAAACTAAAAGACATGTGAAAAACACATGATCATCTAACTAGAT
GCAGAAAAGGGCCTTTGATAAAACAACCCTTAATGATAAAAGTCCTGGAA
AGATTAGTGATTCAGGAGACATATTTCAACATAATAAAGGCATTTTTACC
TGTAGGGTGTCAGATATCTCTGTATACTGGGGGTGGGGTGGGGGTGCAGT
GGGCAGGCGTTAAACTGAATTTGGGAAGATGAACAGGTTTCACAGGACTA
TTGTTCTGCCAGGAATGCTGTGTTACAGCTCTTAGAAAGGCAATGAAAAG
GTTTAGGCAGCCTGCTAGAGATGGGTAACCAGCGTTCTGGGTCCTGACAG
CTGCAGCGCTTGCTTTGATCAGAGCCTCTGCAGGCA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCNNNCCCCTATT
TTTCNNNNCCTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATTATTATT
TATGTAAATATATATATATCTATATTATTTCCACCCACTAACTTTTAGGG
ACCTTTACATTTCAAAGATTGGAAATAATGCTAGGTATGTTTGTGCAGTT
CATTTTTTAAAAGTAACTGTATGAGACTGCTAAGAAATAGAATAGTCTTT
CAAGCTTTAATAACCTCCCAAGTAATGTTAAATTGGTACCTATTAAACCG
GGAACTGTGTAATCAAAAGAGAATGGAATTCTGCCTTGTGAGGAATACAA
AATAGCTCTCTAGGTGGGTAATGAAAACTAAAGAGTTACATAACCTTGAA
AGTTCATTATGGAGAACAAATTCCTTCCTCTCTCCTTCCTTTTCCTCTTC
CTCCCCATTATCTTTCTTCCTTTTTTCTTTTCTTCAGCAGCCAAACAATT
TTCCTAATCTGGCAAATAATGTTAACTTTCAAACATGTACACAAATTGCT
GACATACAACAACAACAACAAGAACTAAAACAACCACAGCAGCATGAAAT
AAATAGAGCTGGCTGTGTGTAGCTTTCCTATAGTCAGAAAGCAAGACTGC
ATCTGTTGTCCACTTACATTAACTTAACACATAGTTCATGGGAAAACCAA
TAGTCCTTCCATGGAACATCTATGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_n22.g1 MSMg01no098_n22.g1 CHROMAT_FILE:
MSMg01no098_n22.g1 PHD_FILE: MSMg01no098_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:07 2005
         (468 letters)



>mm_chr8_58276997_58277864
          Length = 868

 Score =  870 bits (450), Expect = 0.0
 Identities = 463/468 (98%), Gaps = 2/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaattattatttatgtaaatatatatatatctatattatttccacccactaacttttag 60
           |||||||||||||||||||  ||||||||||||||||||||||||   ||||||||||||
Sbjct: 578 ttaattattatttatgtaa--atatatatatctatattatttccaaatactaacttttag 521

                                                                       
Query: 61  ggacctttacatttcaaagattggaaataatgctaggtatgtttgtgcagttcatttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ggacctttacatttcaaagattggaaataatgctaggtatgtttgtgcagttcatttttt 461

                                                                       
Query: 121 aaaagtaactgtatgagactgctaagaaatagaatagtctttcaagctttaataacctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aaaagtaactgtatgagactgctaagaaatagaatagtctttcaagctttaataacctcc 401

                                                                       
Query: 181 caagtaatgttaaattggtacctattaaaccgggaactgtgtaatcaaaagagaatggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 caagtaatgttaaattggtacctattaaaccgggaactgtgtaatcaaaagagaatggaa 341

                                                                       
Query: 241 ttctgccttgtgaggaatacaaaatagctctctaggtgggtaatgaaaactaaagagtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttctgccttgtgaggaatacaaaatagctctctaggtgggtaatgaaaactaaagagtta 281

                                                                       
Query: 301 cataaccttgaaagttcattatggagaacaaattccttcctctctccttccttttcctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cataaccttgaaagttcattatggagaacaaattccttcctctctccttccttttcctct 221

                                                                       
Query: 361 tcctccccattatctttcttccttttttcttttcttcagcagccaaacaattttcctaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 tcctccccattatctttcttccttttttcttttcttcagcagccaaacaattttcctaat 161

                                                           
Query: 421 ctggcaaataatgttaactttcaaacatgtacacaaattgctgacata 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 ctggcaaataatgttaactttcaaacatgtacacaaattgctgacata 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)