BAC Information

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BAC

Clone NameMSMg01-100A02
Chromosome8 (Build37)
Map Location 8,146,307 - 8,146,826
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039836, Efnb2, 9430010O03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100A02.T7 (MSMg01no100_a02.b1)MSMg01-100A02.TJ (MSMg01no100_a02.g1)
ACCAG315809AG315810
length845697
length of high quality
(start - end)
---517 (84 - 600)
definitionCHROMAT_FILE: MSMg01no100_a02.b1 PHD_FILE: MSMg01no100_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:44 2005CHROMAT_FILE: MSMg01no100_a02.g1 PHD_FILE: MSMg01no100_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNCCCCTCCCCTCTCCTCTCTTTTTTTCTTTCTCCCTCCAACCCAAA
TCAAANNCANNAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTC
AAAGAGAATCCGCGGAATTCTTTGCTATTCCCATGTATGTTGTTCTACCT
TACATTGTGAAGTTGAGCTCCATATATAGAAATGCTCTAAAAAATTTCCA
GTGCTTCTGCTGCGGCTACTTGCTGCTTGCTTAGACTTTGACCGATTAGC
AGATTGATGTCACCTGATTCATCTGCCAAATTTACTAACTCAGACTCTAG
TGCTGATGCAAGGTTTCATTTAATCCATGTTCTTTCCCCATCCCCCCAAA
AATGTACGATCCCCCTCTATACGTTTTCTATTACACTTTTTTACTATATC
ATGCATCTAATATTATTAGACGTGCATTCTCCTGACAAACACTGCTATCT
GCACTGCTATTTATTCCATATCTTACAACTGGCATAAAGCTCTATTTCTT
TCTTTATGATCTATATTCACTTCATCAACAACCTTATTCAATCCAAGTCA
TCCAATCTTCCTGCAAACAATCACTTTGCACTATCGCTACTACCCTTTCC
CGTTCACCCACAACCATATGCCCTCAAATTATTCTATTTACCCCCCCAAC
CACTCTCCCCCCATCTCGTACCTCCCCCGCCCCATGGACCTAATGTGCCG
CCACGTGTAACTTTCTCATCCGCTTTAATCTCCCCTGCCTTTGTATAACC
CCCCCCCTATCACCCCTTTATCCCCCCCACTAATTTTGTATCCGCTAATG
TCTCTTTATTTTCCGCCNACCCCCCCCCCCCCTTCTTGTTTTTTG
CCCCAATACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCAAGGTTCTTAATA
AAGGTGGCAAATGCTTGCATTATCCTTTATAGGGGTACATATGATTTTCT
TTTATGATTTTCACTTCTGACTATTAACATTTCTAGGTACAGACAATTTC
ATGTGGGAAAACAGGATGTTTGATGGCCTTATTTAAACAATGAGAATACA
TAGTCCCAGAGAGCCCATAACTGTGAATAGTGCCCCACTTGAACCTCTGC
CACCCTTTATGAACCCTTTGAACATCCACATACCACCTACTGCCAAGATA
TGCTGCCTGTTTTTCATAGGACATCTACTTTTTTATCTAAATGACATGGT
ATTTAATTGACAGGTGAGTGAGTGGCTTGTGTTGCTTATGTGATGGTGCC
TTCAGAGCCTGGCTGTTGACACCTGCCCCTGGTGATCTTTAAGGCTAATC
CTCAGGTTATTTTCTTCCACTTCTATGACAGAGCACACAGTTAGATAGCC
TTGACCATTACAGATCTATTATTCCACATCTCTGGAAGATAGTCTGAAAT
GCAGGGGCTAACTATGGTACATACTCTCCGTGAATGTACGGGGAAATACT
TCGGGGCCTCTTCCCTACTTCCGGCGGCTTCCAGCTTGCCATTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_a02.g1 MSMg01no100_a02.g1 CHROMAT_FILE:
MSMg01no100_a02.g1 PHD_FILE: MSMg01no100_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:44 2005
         (517 letters)



>mm_chr8_8146107_8147026
          Length = 920

 Score =  946 bits (489), Expect = 0.0
 Identities = 512/521 (98%), Gaps = 5/521 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctcaaggttcttaataaaggtggcaaatgcttgcattatcctttataggggtacatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 cctcaaggttcttaataaaggtggcaaatgcttgcattatcctttataggggtacatatg 661

                                                                       
Query: 61  attttcttttatga-ttttcacttctgactattaacatttctaggtacagacaatttcat 119
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 660 attttcttttatgatttttcacttctgactattaacatttctaggtagagacaatttcat 601

                                                                       
Query: 120 gtgggaaaacaggatgtttgatggccttatttaaacaatgagaatacatagtcccagaga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gtgggaaaacaggatgtttgatggccttatttaaacaatgagaatacatagtcccagaga 541

                                                                       
Query: 180 gcccataactgtgaatagtgccccacttgaacctctgccaccctttatgaaccctttgaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gcccataactgtgaatagtgccccacttgaacctctgccaccctttatgaaccctttgaa 481

                                                                       
Query: 240 catccacataccacctactgccaagatatgctgcctgtttttcataggacat---ctact 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 480 catccacataccacctactgccaagatatgctgcctgtttttcataggacatctcctact 421

                                                                       
Query: 297 tttttatctaaatgacatggtatttaattgacaggtgagtgagtggcttgtgttgcttat 356
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 420 tttttatctaaatgacatggcatttaattgacaggtgagtgagtggcttgtgttgctcat 361

                                                                       
Query: 357 gtgatggtgccttcagagcctggctgttgacacctgcccctggtgatctttaaggctaat 416
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 360 gtgatggtgccttcagagcctggctgttgacacctggccctggtgatctttaaggctaat 301

                                                                       
Query: 417 cctcaggttattttcttccacttctatgacagagcacacagttagatagccttgaccatt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 300 cctcaggttattttcttccacttctatgacagagcacacagttagatag-cttgaccatt 242

                                                    
Query: 477 acagatctattattccacatctctggaagatagtctgaaat 517
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acagatctattattccacatctctggaagatagtctgaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 920
Length adjustment: 10
Effective length of query: 507
Effective length of database: 910
Effective search space:   461370
Effective search space used:   461370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)