BAC Information

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BAC

Clone NameMSMg01-100A13
Chromosome8 (Build37)
Map Location 73,014,889 - 73,015,227
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l
Downstream geneCrlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100A13.T7 (MSMg01no100_a13.b1)MSMg01-100A13.TJ (MSMg01no100_a13.g1)
ACCAG315831AG315832
length812777
length of high quality
(start - end)		169 (92 - 260)339 (137 - 475)
definitionCHROMAT_FILE: MSMg01no100_a13.b1 PHD_FILE: MSMg01no100_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:46 2005CHROMAT_FILE: MSMg01no100_a13.g1 PHD_FILE: MSMg01no100_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNCCCCCCCNNNNCCCCCCNNNCCNNGGGCCTCCC
NCCCCTCTXXXXXXXXXXXXXXXXXXXXXXXCTACAAGAGAGATCCGCGG
AATTCTTTGTGCACAAGAGGCTGGCCTTAATATNAGCAGTTCTCTTGCCT
CAGCCTCTCAAGTGTTAAGACAGTTCTCAGCACTATGACAGTGATGCCTG
GGCTTACCCCCTTTTTTATGATGTGGTCCTTGTCACAGTTGTGCGAAATG
GGTGACTACCTGATTCTTTCCTCAGGCAAGGCACCTGTGGTCTTCCTGGT
CCCCTTGGCAAACCCCGGCCCTCCTGCNTAGGAGCAATTACCCCGGTACC
CCTGCCACGGGTCCCCTGAATGAACTGGCTTATTAATTCCCACGGTTTAA
TGGGAAATCAAAAACTCCTCTTTTTTTGTAGAAGGCTCTTAAACCCCCAC
TGGGACCCACGGGGGGCTTTTTCATTTTTTTCAATTTCTACCAAAAAAAA
AACCTCTTTGGTTTCCTCGCGCTCACTCTTCCTCCAAAAAGGTTGTGTTG
TTTTTTCTGTTTGGCCCCCCCCCCCCATTTCTAAATTCCCCTCTCGAACT
CCTGTGTCCTCCCAATAATTTATTTCGGTGTAATTTTTCTCTTTCTCTCC
CCCCTCCCCCCGGCATGGTACCTTCCCCCCCCTCACCTATATCGTTCACA
TAAATCCTCTGTCTCCTCCTCTCTTTAAAACCCGCTCCTACTTCCTTTCC
TTGTTTTCCCATAACTTTTCCCCTCTTCCTTATTCCACCTTCCCTCCGTC
TCCTCTTCACTC

NNNNNNNNNCCCCCCCCCCCNCCCCCCNNCCNNCCTCCCCCCCCCCCCCC
CTCGCCCCCTTCCGATGACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGGCGCGAGG
GAAGTTTTCCCCGAAGCCACAGGCAAAGAAGGAAGGCTCCTGAAAACAAC
GAGCCCAAACAGCCAGCGAGCTGGAGAGGGGAGCATCTGGTATGGGCACG
GGTGGCAAGGCAGAGTTGGGTCTCATTTCTTTCAAAGTCCCTCTGCCTGT
GACGAAAACAAAGACTGAAGGAAGACGGAAGGAACCCCAGAGGAGGGCCT
GCAACATCCCGGGAGGCGGAAGGAGCCCAGAGGAGGGCCTGCAACATCCC
GGGAAGAGGATGAGGGGCCTGGACCAGGAGAGGGGTGTGTCAGAAGCTCA
GGATGGGGGTGTGTTTTGGAACCAGGGCCAACCGGATTGCTGATGGATTG
CACGTATGGGAAGAAGGGGAAAGTATTCAGTCACGCAGCTCCCAGGTCGT
TGCCTGCAGCACCTGTGTGTATAGGGGAAGTTAGCCCTTTCCACCCGGTA
CTGGTAGGAGGAGCATTCCGGGAACCACTACATCGAATAACTTCGCCCCC
AACACCCCCCAGAAACCCGAGAATCCTACCCCCCCACCATAAGGAAGGAC
GTTAGCCCCCATCTCTCTCGCTGCATGCAGCCTCCTTTATGTATTTCCTT
TTTTCTCTCTAACCACCCACCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_a13.g1 MSMg01no100_a13.g1 CHROMAT_FILE:
MSMg01no100_a13.g1 PHD_FILE: MSMg01no100_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:46 2005
         (339 letters)



>mm_chr8_73014689_73015427
          Length = 739

 Score =  656 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaaggcgcgagggaagttttccccgaagccacaggcaaagaaggaaggctcctgaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaaggcgcgagggaagttttccccgaagccacaggcaaagaaggaaggctcctgaaaa 260

                                                                       
Query: 61  caacgagcccaaacagccagcgagctggagaggggagcatctggtatgggcacgggtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacgagcccaaacagccagcgagctggagaggggagcatctggtatgggcacgggtggc 320

                                                                       
Query: 121 aaggcagagttgggtctcatttctttcaaagtccctctgcctgtgacgaaaacaaagact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggcagagttgggtctcatttctttcaaagtccctctgcctgtgacgaaaacaaagact 380

                                                                       
Query: 181 gaaggaagacggaaggaaccccagaggagggcctgcaacatcccgggaggcggaaggagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaggaagacggaaggaaccccagaggagggcctgcaacatcccgggaggcggaaggagc 440

                                                                       
Query: 241 ccagaggagggcctgcaacatcccgggaagaggatgaggggcctggaccaggagaggggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagaggagggcctgcaacatcccgggaagaggatgaggggcctggaccaggagaggggt 500

                                                  
Query: 301 gtgtcagaagctcaggatgggggtgtgttttggaaccag 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtcagaagctcaggatgggggtgtgttttggaaccag 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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