BAC Information

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BAC

Clone NameMSMg01-100C16
Chromosome8 (Build37)
Map Location 51,106,825 - 51,276,245
singlet/doubletdoublet
Overlap geneEG667495
Upstream geneLOC100039866, 4930555F03Rik, LOC100039919
Downstream geneLOC100039954, LOC100039966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100C16.T7 (MSMg01no100_c16.b1)MSMg01-100C16.TJ (MSMg01no100_c16.g1)
ACCAG315933AG315934
length697757
length of high quality
(start - end)
566 (43 - 608)166 (432 - 597)
definitionCHROMAT_FILE: MSMg01no100_c16.b1 PHD_FILE: MSMg01no100_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:57 2005CHROMAT_FILE: MSMg01no100_c16.g1 PHD_FILE: MSMg01no100_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,275,684 - 51,276,245)(51,106,825 - 51,106,982)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATACTTCACCATCGAACCTTTCATCTAATTAAGCAACTAAGACCTTC
TTCACCTTACCCTCTACTTTCTCTAGCATGCTGGCAATACCACAGTCCAG
CCCAACAGCTTCACCTTGTCCAAATAGTCTACCCAAGATACAAGTCTCAT
CATGTATTCAACCTGGGGCTTATTGTTACCATGAGAAAAAGCAAGCTGTG
TGGTTTGATCTGAAGAAGCAGACCTTGGGTGGCTAAACTCTGGTTCACTC
CCTCCATACCAAGCCCTTGATCCTTCAGCCAGATATTTTTACTGGATCAA
CCCAGAATTTCTTAGAATTCTTTATACAGCATGGCAATTCTTATCATCGT
GAAATTATTTCAACTTGCTTATAAATTAGCAGTTTTCCCTTTTACTCTTG
TCAGATCTGTAAGTTTCACTTCATTCACCCATCACTTCCCTTGGGATCCT
TCTGTAATTCTCCAAGGCGGGATTATGCATGAAAATCCTCTGTATACCTC
TGCTAGTACACTTCCCATGTTGATTATGCAAAATCGGCCCCTTCTATTTG
CTTCTAGATTCAATAGCTTCATGAAATAAGTTTTAGCCTCTTTTGTTTCT
AAACAGCCTAGAGAAGGTTTGGGAAAGTGATTGCCGTGAAATACATA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCC
CCCCACTACCCCCCCCGATGATATGGGTAGGNTGGGGGCGCCATTCCGTA
CCGTGAGGNGAACNANAGATGACANGAGCAAGCANNNNCANNGNAAAAAA
GANACNGGNNCNCCAAGAACAAGGCGGCAAGCCACCAAAAGCTGCTTNGC
GGGACGGCCGGGAAGGAACCGGGAACAGGCAAATGGACAGGCCTGCCAAC
AAAAGACCGGGCTCTTCATCTTCATGAGATGAGCTAGCAGCAAAGGATAG
TGTTTCTTTTTTAGAATTTTTCCTAGGGAAGATTGAGCTATCTATAAATA
TCTATATCTATATCTATATCTTTTTTTTTTTCTATAGCCACACCNATAGC
TATATCTATATCTATATCTACACCCATACCTATATCTATATCTATATCTA
TATCTATATCTATATCTATATCTATCTATTATTCTAGAAGAAGCCATCAT
CAAAGAATCTCTAAAAATTAATAATCCAATTCTAGAAACATTAATAGCTA
TAATAGCACTACTAAATTTATTCTTCTATACATGCTTCATTTATTCCACT
TCACTTACCATTTTTGCAAATAAACTACTTTATCTTTTACGTGCCTTAAA
TACTGATTGTTCGTTTGAATGATTGTTAATGTTAATGGAAACAGNCTCTC
CCTATTTTTTTTTTTTACCATAGAGGCTTGGCCTAGAATGCTACCAAGCT
CTGCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_c16.b1 MSMg01no100_c16.b1 CHROMAT_FILE:
MSMg01no100_c16.b1 PHD_FILE: MSMg01no100_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:57 2005
         (566 letters)



>mm_chr8_51275480_51276445
          Length = 966

 Score = 1048 bits (542), Expect = 0.0
 Identities = 557/562 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatacttcaccatcgaacctttcatctaattaagcaactaagaccttcttcacc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gaattccatacttcagcatcgaacctttcatctaattaagcaactaagaccttcttcacc 707

                                                                       
Query: 65  ttaccctctactttctctagcatgctggcaataccacagtccagcccaacagcttcacct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ttaccctctactttctctagcatgctggcaataccacagtccagcccaacagcttcacct 647

                                                                       
Query: 125 tgtccaaatagtctacccaagatacaagtctcatcatgtattcaacctggggcttattgt 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tgtccaagtagtctacccaagatacaagtctcatcatgtattcaacctggggcttattgt 587

                                                                       
Query: 185 taccatgagaaaaagcaagctgtgtggtttgatctgaagaagcagaccttgggtggctaa 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 586 taccatgagaaaaagcaagctgtgtggtttaatctgaagaagcagaccttgggtggctaa 527

                                                                       
Query: 245 actctggttcactccctccataccaagcccttgatccttcagccagatatttttactgga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 526 actctggttcactccctccataccaagcccttgatccttcagccagataattttactgga 467

                                                                       
Query: 305 tcaacccagaatttcttagaattctttatacagcatggcaattcttatcatcgtgaaatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tcaacccagaatttcttagaattctttatacagcatggcaattcttatcatcgtgaaatt 407

                                                                       
Query: 365 atttcaacttgcttataaattagcagttttcccttttactcttgtcagatctgtaagttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 atttcaacttgcttataaattagcagttttcccttttactcttgtcagatctgtaagttt 347

                                                                       
Query: 425 cacttcattcacccatcacttcccttgggatccttctgtaattctccaaggcgggattat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cacttcattcacccatcacttcccttgggatccttctgtaattctccaaggcgggattat 287

                                                                       
Query: 485 gcatgaaaatcctctgtatacctctgctagtacacttcccatgttgattatgcaaaatcg 544
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 286 gcatgaaaatcctctgtatacctctgctagtacacttcccatgttgtttatgcaaaatcg 227

                                 
Query: 545 gccccttctatttgcttctaga 566
           ||||||||||||||||||||||
Sbjct: 226 gccccttctatttgcttctaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no100_c16.g1 MSMg01no100_c16.g1 CHROMAT_FILE:
MSMg01no100_c16.g1 PHD_FILE: MSMg01no100_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:57 2005
         (166 letters)



>mm_chr8_51106617_51107182
          Length = 566

 Score =  197 bits (102), Expect = 2e-55
 Identities = 145/160 (90%), Gaps = 3/160 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   tatctatatctatatcta-tatctatatctatatctatctattattctagaagaagccat 66
           ||||||||   |||||||  || ||||| ||||| |||  ||||||||||||| ||||||
Sbjct: 209 tatctata--aatatctagaatttatatatatatatataaattattctagaaggagccat 266

                                                                       
Query: 67  catcaaagaatctctaaaaattaataatccaattctagaaacattaatagctataatagc 126
           |||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 267 catcaaagaatccctaaaaattaataatttaattctagaaacattaatagctataatagc 326

                                                   
Query: 127 actactaaatttattcttctatacatgcttcatttattcc 166
           ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 327 actactaaatttattcttctatacatgcttcattttttcc 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)