Query= MSMg01no101_b01.b1 MSMg01no101_b01.b1 CHROMAT_FILE:
MSMg01no101_b01.b1 PHD_FILE: MSMg01no101_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:08 2005
(367 letters)
>mm_chr8_85921703_85922469
Length = 767
Score = 704 bits (364), Expect = 0.0
Identities = 367/368 (99%), Gaps = 1/368 (0%)
Strand = Plus / Minus
Query: 1 tgggttcatttc-actgtacacacatgtggaggcatttggagtttgcggggacggagaac 59
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tgggttcatttcaactgtacacacatgtggaggcatttggagtttgcggggacggagaac 600
Query: 60 aatttgtacagaggcaggcaggcaggcaggcatgatctttgccttatacaattatggaag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aatttgtacagaggcaggcaggcaggcaggcatgatctttgccttatacaattatggaag 540
Query: 120 ttatgagaagaaattggccatggtagcctagcacatgctgtgatgtaacctccttgcagt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ttatgagaagaaattggccatggtagcctagcacatgctgtgatgtaacctccttgcagt 480
Query: 180 gtcagagctctcagctatgtgtttcagggtgtgaggacctcctagacagtgaactcccct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtcagagctctcagctatgtgtttcagggtgtgaggacctcctagacagtgaactcccct 420
Query: 240 cctgctcagctggagcagagggagaacttccttttgggcataatggttggggaggctgct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cctgctcagctggagcagagggagaacttccttttgggcataatggttggggaggctgct 360
Query: 300 tgtggaccagaagggagactctcttttgtcattctctgaggtggtccttctagggaagga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgtggaccagaagggagactctcttttgtcattctctgaggtggtccttctagggaagga 300
Query: 360 aatatgac 367
||||||||
Sbjct: 299 aatatgac 292
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space: 271364
Effective search space used: 271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no101_b01.g1 MSMg01no101_b01.g1 CHROMAT_FILE:
MSMg01no101_b01.g1 PHD_FILE: MSMg01no101_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:08 2005
(542 letters)
>mm_chr8_85854762_85855704
Length = 943
Score = 1042 bits (539), Expect = 0.0
Identities = 542/543 (99%), Gaps = 1/543 (0%)
Strand = Plus / Plus
Query: 1 agttaggttataattaatgttgaattttctttattttgaagg-attacctattctgtagg 59
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 agttaggttataattaatgttgaattttctttattttgaaggtattacctattctgtagg 260
Query: 60 tcctctgtgcccctccataggtgtcaaaaattcgctgcaattcacatttcccagtcatct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctctgtgcccctccataggtgtcaaaaattcgctgcaattcacatttcccagtcatct 320
Query: 120 gccgtaagagccatttcatccaaaatcggaaaaagtgtccatagaaaaactcccacagag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccgtaagagccatttcatccaaaatcggaaaaagtgtccatagaaaaactcccacagag 380
Query: 180 acacgaacatgtttccctggaaagaggatataaacacacaagcttaacggtctcaaactg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacgaacatgtttccctggaaagaggatataaacacacaagcttaacggtctcaaactg 440
Query: 240 gaattataaaactgaaaaagaaattaagttgatccaactccccaaatgataatgaaatat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaattataaaactgaaaaagaaattaagttgatccaactccccaaatgataatgaaatat 500
Query: 300 attattccattgtgtctattttgtgagtgtttaattcatcaggcaaggaaataacataca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attattccattgtgtctattttgtgagtgtttaattcatcaggcaaggaaataacataca 560
Query: 360 acagcttaaataatgatttgccaaatggtcacttgaaaaaaaaatgtaaaaagtagccaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagcttaaataatgatttgccaaatggtcacttgaaaaaaaaatgtaaaaagtagccaa 620
Query: 420 ataactggccaaattatttaatcgctaaaaagaataaccacatttcatttttgccaaata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataactggccaaattatttaatcgctaaaaagaataaccacatttcatttttgccaaata 680
Query: 480 ttatatttaatattttggattcatacttccgtttttcatcccttgaaacttggaacaaag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttatatttaatattttggattcatacttccgtttttcatcccttgaaacttggaacaaag 740
Query: 540 aag 542
|||
Sbjct: 741 aag 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 943
Length adjustment: 10
Effective length of query: 532
Effective length of database: 933
Effective search space: 496356
Effective search space used: 496356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
