BAC Information

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BAC

Clone NameMSMg01-101I16
Chromosome8 (Build37)
Map Location 107,178,984 - 107,179,110
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik
Downstream geneEG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101I16.T7 (MSMg01no101_i16.b1)MSMg01-101I16.TJ (MSMg01no101_i16.g1)
ACCAG316927AG316928
length805851
length of high quality
(start - end)
204 (131 - 334)127 (184 - 310)
definitionCHROMAT_FILE: MSMg01no101_i16.b1 PHD_FILE: MSMg01no101_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:47 2005CHROMAT_FILE: MSMg01no101_i16.g1 PHD_FILE: MSMg01no101_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTNNTTTTNTCTTTTTCTTTTTTTTCCTCCTTTNCCTCCATA
CTCTCTCTCTCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAAAG
AGGACCGCGGAATTCTCACCTTACGAATACCGAATGGCAGAGAAGCACCT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTACA
TTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGA
GGATCCTCAGAAAATTGGACATAGCACTACTTTTTGATCCAACAATACCT
CTCCTGGGCATATATCCTGAATATGCCCCACCTGGCCACGAAGGACACAT
AGCTCCACTATGTTCATATGAAGCCTTATTTATTATAGCCTGAAGCTGAG
ATAGAACCCAGATGCCCCTTCAATATAAGCAATGCATATCATGATAAAGT
TGCTACATCCAACCCTCTGTCATTAATAATTCATTTTATTATAAACCTCT
GTTATTCCGGAAATCCCCAATTCCAATGATATGGCATCTGGAAGCCACAT
CTTCCCTGAGGTGACGTAAATTAATATACAAAAGGGAGCGCACATCTATA
TGCTACCACTATAGATATTTAAGTATATAAACACACCAATACCTAATGAA
CACTCTACTAATTCCACATTTCCTATTTCCTTAAATTACATGTAGTCAAC
GAAAG
NNNNNNNNNNNNNNNNNTTTTTTNTTTTTTCTTTCCNTTTCCCCACAAAT
ACTTTTTCTATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTT
TAATACAAAGGGTTTTTCATTCACGGAGTCGAAGACTAACCATAGGACAT
CATGAAGCAAGGATTCTTGCATTACTCACCTTGGACACTAGAGGGCAGAC
AAAGATAAAGTTCCAAAAGGGTTTAGGTGCTAGCCAACCTTTGAGCACAG
GGAGATGACGATCACCTGATGCCCCTGCTGGAGCCTGAATGCGTTGCTGG
TTGCAAGCACATTTCAGCAAATAAACTTTTTTTTTCATCAAGAGCTTCAG
CAGGCACCCTTTAGATCTCTTTAATTGCGCTACTTCCCGCAGACCTTTTA
AGATCAAATGATAAGTATTGCATTCATATTTTAATTAATTTACCTATCCT
AGCTCAGGAAGCAATGAAAATAACAAAAATGATGCCTCGTAAAACTATAT
CCTACTTCTAATAACATAGTACATCTTGTCTATTATTCCTGAATTTAAAA
AAACTCGCCATCCTCAGCTGCTCTTTCCCAATTAAACAATTTGATTAGAA
ACCCCGATACCCATTGCCAGATTATTTAATAACCTACTAGCAACTCACAC
TCTCCACACTTCTTACTATACATTCTAAATCTCCTCCCGAATCACCGGAC
TCCAAATAAACAAAATAAAATAAAATACTTATTGACGCTCACTTTTTCGT
CTCTCATGAAAACATAATTGCTAAAGAGAGAAAACCAAAGGACCGAGGAC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_i16.g1 MSMg01no101_i16.g1 CHROMAT_FILE:
MSMg01no101_i16.g1 PHD_FILE: MSMg01no101_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:47 2005
         (127 letters)



>mm_chr8_107178784_107179310
          Length = 527

 Score =  238 bits (123), Expect = 1e-67
 Identities = 126/127 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gactaaccataggacatcatgaagcaaggattcttgcattactcaccttggacactagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gactaaccataggacatcatgaagcaaggattcttgcattactcaccttggacactagag 260

                                                                       
Query: 61  ggcagacaaagataaagttccaaaagggtttaggtgctagccaacctttgagcacaggga 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcagacaaagataaagttccacaagggtttaggtgctagccaacctttgagcacaggga 320

                  
Query: 121 gatgacg 127
           |||||||
Sbjct: 321 gatgacg 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 527
Length adjustment: 8
Effective length of query: 119
Effective length of database: 519
Effective search space:    61761
Effective search space used:    61761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)