BAC Information

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BAC

Clone NameMSMg01-101I21
Chromosome8 (Build37)
Map Location 101,482,641 - 101,483,223
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik, LOC667531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101I21.T7 (MSMg01no101_i21.b1)MSMg01-101I21.TJ (MSMg01no101_i21.g1)
ACCAG316937AG316938
length671799
length of high quality
(start - end)
582 (46 - 627)332 (130 - 461)
definitionCHROMAT_FILE: MSMg01no101_i21.b1 PHD_FILE: MSMg01no101_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:48 2005CHROMAT_FILE: MSMg01no101_i21.g1 PHD_FILE: MSMg01no101_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCCTATTCAAGAGATCCGCGGATTCTCGTGTTGCGAAAAGCAAATCAG
GGTAGTGTTAGAAGGCTCTCTTCTATGAAGAGGATCATTGCTCCATTTTC
TCAAGCCGTATGAGTTTGTGTAAAGTTCATGATAGCTCAGTCTCCCAGCT
GATATTTGTAAATAATGACTTTCATAAATAAAAAAAAAATACAAACTGTC
AACCTCTGATCTCAAGGTTTTGAACCTGGAAGTTGGTCTTTTAATTACCA
GTTTTCCTGATATTTTTCTCTGATAATTTCAATTTTTTCACTCTTTTATT
TTCCCGGTTTCCTAATGAGAAGGTTATTCAGAATCACATATTCTTATATT
TCCTGAAACGCTCTATCAATCTGTAAAATGTGTAACGTGTAAAATTCCTA
AATAATACTATGTGGCTCTTCTCACCACCACCTCCATCCCCCTCAGGGTT
TTAAGTAATAGAGTCACTTAGACTTAATAGGCAACAAATTACGTGAATTA
TTTGTTGCTAGCCCAGGAGATAATGCTCCATATTTTTCAAGGCTTGTTAT
CCTGTTTAAAGCTATGGAGTTTTAATTATTATTTCAATTGGATCTTTCAA
AAGAAACTAGAACCCTAATCACATAGTGTTTTTTTTTCTTTGCCTTGTTT
ACATTTAGCACCAAATGGACN
CAAACAAAACCAACAAAAAATTAAGAACACACACCTTNTCCNCCTCAGAA
CATANCTCGATGATATGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGATAGCCAAGGCTACACA
GAGAAACGCTCTGTCTCAGAAAAAAAGAAAGAAAGGAAGAAAGAAAGAAA
AAAAAAGAAAAATCAAAATTTAGGCAAACCTAGTAACTCTTCTAAAAGAT
TATACACACACACACACACACACACACACACACACACACACTAAGGTAGA
GAACATCAGAACATCATAGTTACCATATTTACTCAGTTAAATGTACAAAA
TATAGCACTAAAGTATGGAAAGGACAGTTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTATG
TGTGTGTGTGTGTGGTGGATTAATATGGAAAGAATAAATAATATATATTT
AAATTAATATTATACTATACTTTTTCATTTGCTCCTCACCATTAATTACT
CTTTATTATGTATTTATCATAATATTCTATGTAATATTCTCTGTTATATA
TTCCCCTCTTTTTTCTTCTTTAAATCAATCCCTTACATATCTTTAGAACT
TACTACTCCCTCCATATGCATTATACTATCCTTTTTTCTTAATTTCCCTT
TTAATCCTAACTCACATTCAACTCTTCACTTTTTTACTCAATTACTATAT
ATAAAATACTTAACATTTTTTTATTATACTTACTTTTATATTTCACTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_i21.b1 MSMg01no101_i21.b1 CHROMAT_FILE:
MSMg01no101_i21.b1 PHD_FILE: MSMg01no101_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:48 2005
         (582 letters)



>mm_chr8_101482441_101483423
          Length = 983

 Score = 1089 bits (563), Expect = 0.0
 Identities = 578/583 (99%), Gaps = 1/583 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcagggtagtgttagaaggctctcttctatgaagaggatcattgctccattttctcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcagggtagtgttagaaggctctcttctatgaagaggatcattgctccattttctcaag 260

                                                                       
Query: 61  ccgtatgagtttgtgtaaagttcatgatagctcagtctcccagctgatatttgtaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgtatgagtttgtgtaaagttcatgatagctcagtctcccagctgatatttgtaaataa 320

                                                                       
Query: 121 tgactttcataaataaaaaaaaaa-tacaaactgtcaacctctgatctcaaggttttgaa 179
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tgactttcataaataaaaaaaaaaatacaaactgtcaacctctgatctcaaggttttgaa 380

                                                                       
Query: 180 cctggaagttggtcttttaattaccagttttcctgatatttttctctgataatttcaatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctggaagttggtcttttaattaccagttttcctgatatttttctctgataatttcaatt 440

                                                                       
Query: 240 ttttcactcttttattttcccggtttcctaatgagaaggttattcagaatcacatattct 299
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttcacacatttattttcccggtttcctaatgagaaggttattcagaatcacatattct 500

                                                                       
Query: 300 tatatttcctgaaacgctctatcaatctgtaaaatgtgtaacgtgtaaaattcctaaata 359
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatatttcctgaaaccctctatcaatctgtaaaatgtgtaacgtgtaaaattcctaaata 560

                                                                       
Query: 360 atactatgtggctcttctcaccaccacctccatccccctcagggttttaagtaatagagt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atactatgtggctcttctcaccaccacctccatccccctcagggttttaagtaatagagt 620

                                                                       
Query: 420 cacttagacttaataggcaacaaattacgtgaattatttgttgctagcccaggagataat 479
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 cacttagacttaataggcaacaaattaggtgaattatttgttgctagcccaggagataat 680

                                                                       
Query: 480 gctccatatttttcaaggcttgttatcctgtttaaagctatggagttttaattattattt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctccatatttttcaaggcttgttatcctgtttaaagctatggagttttaattattattt 740

                                                      
Query: 540 caattggatctttcaaaagaaactagaaccctaatcacatagt 582
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caattggatctttcaaaagaaactagaaccctaatcacatagt 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 983
Length adjustment: 10
Effective length of query: 572
Effective length of database: 973
Effective search space:   556556
Effective search space used:   556556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)