BAC Information

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BAC

Clone NameMSMg01-101J08
Chromosome8 (Build37)
Map Location 37,075,360 - 37,075,522
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23
Downstream geneLOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101J08.T7 (MSMg01no101_j08.b1)MSMg01-101J08.TJ (MSMg01no101_j08.g1)
ACCAG316959AG316960
length719735
length of high quality
(start - end)
251 (76 - 326)164 (126 - 289)
definitionCHROMAT_FILE: MSMg01no101_j08.b1 PHD_FILE: MSMg01no101_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:51 2005CHROMAT_FILE: MSMg01no101_j08.g1 PHD_FILE: MSMg01no101_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATGGGCGG
AATTCAAATCCCATTTCCGCATAACAGCTTGTGGTGGGAGGGTGACCCAC
CTTTCATCCCAGCATTTGGGATGTGAAACAGGAGACTCTCTGGGCAAGCT
GGCTTGCTGGAGTAGCTAGAATCAGTGAGCTCTGGGATCAGCAAGAAGCC
CTTGCCTTAGTAAATAAAGGGAAGATCAATTGAAGACACCTCTTGTCCAT
TTCTACCCAATCCAGAAGCAACACACACACAAAAAAACCATTTCACTGGG
TGAAATGAAAAGTACCAGAGGGAAAAGAAAGCTTAAGAAGAGGTGTTGTG
AGTAAATGGGACTTGAAAAGCCAGGCAGAGTGAGAGAAGTGGGCAGTGGT
TAGATGTGTCTACACTGAGGACAAAGATCAGAGCTCAGATAAGAGAGCAG
AAGGTGACAGGTGACCAAAGCTATGCCATGGATGTGGGCCATAGTCACCA
CAGCTCACTGTGGAGCCCTGCAGCAGGGAGCAAATGACAACTCTTCCTAT
TCCCAGAACACCACATCCTACCATGACCCATCCAGTGCACAGTCCTTCGA
GGCCGCAGTACGATGTCAAGGCTGTGATGTCAGAGCTCCGCCCATGGTGC
TGACTTCAGAACCATGTGATTAACATTCCCATCAGCCCTAGCTCACTGTT
CTGAATCAGTGTCCGCCAA
CTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTTCTGAAATTCTTTAGTATCCAGGGCCTGAAACCTGA
TTCAAATGGCTCATCCAAGTAGAGCAACATACTGACCCTGTATAAAGTCC
AGGGTAGGCTTCAGATATTTTTGGACCTCCAAGAATATCTGAAGACTTGT
TATTATTCTTGTTATTATCTATTCTTTTTCCCCCTCTATGACTTCCTCGT
TTTCAGTATGTTACCTGCGGTGCACAGAAGGAATTCTCTTTGCAAAGAGT
TCCTGGCTCACTTCAGTGTGCCTTTTTTTAACATAGAGTGAACTGTTCCG
TTTAAAATCCAATTATTATTGCCTAACCGCCCCTTTCATTCTAGAACTAT
AATGGATGGCTAATAATTCCTTTATACTGGTAAACCAAGCTAGATGCACC
TGAAAAGGATACAGTATCTTTTTTCCTATATAACCCTATGTCCTTTAATT
CAGATGACGCTCTATTACATTACCTTTTTCTCCGCTTCATATATCCGGGC
AAATTCTCGTCATGATGCCTACTTTAATCTCTCTTCCACTATATTACTTT
CTTCGTTTGATTACCTCTTCTCCTTATCCTCATCCTCCCCCAACTTTTCA
ATTATATTACTATCACTATTTTCTTTGTACTATCCTCTTTCTCTTTCCCC
TCCTATGTTACCTCCGCAACCACTCCTCACTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_j08.g1 MSMg01no101_j08.g1 CHROMAT_FILE:
MSMg01no101_j08.g1 PHD_FILE: MSMg01no101_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:51 2005
         (164 letters)



>mm_chr8_37075160_37075723
          Length = 564

 Score =  300 bits (155), Expect = 3e-86
 Identities = 161/163 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacatactgaccctgtataaagtccagggtaggcttcagatatttttggacctccaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aacatactgaccctgtataaagtccagggtaggcttcagatatttttggacctccaagaa 304

                                                                       
Query: 61  tatctgaagacttgttattattcttgttattatctattctttttccccctctatgacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 303 tatctgaagacttgttattattcttgttattatctattctttttccccctctatgtcttc 244

                                                      
Query: 121 ctcgttttcagtatgttacctgcggtgcacagaaggaattctc 163
           ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 243 ctcgttttcagcatgttacctgcggtgcacagaaggaattctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)