BAC Information

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BAC

Clone NameMSMg01-101L02
Chromosome8 (Build37)
Map Location 91,107,847 - 91,233,357
singlet/doubletdoublet
Overlap geneNkd1, 9130017C17Rik, Nod2, Cyld
Upstream gene4933402J07Rik, Zfp423, LOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369
Downstream geneLOC675985, Sall1, LOC100041089, EG625801, EG384862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101L02.T7 (MSMg01no101_l02.b1)MSMg01-101L02.TJ (MSMg01no101_l02.g1)
ACCAG317038AG317039
length723711
length of high quality
(start - end)
243 (76 - 318)292 (79 - 370)
definitionCHROMAT_FILE: MSMg01no101_l02.b1 PHD_FILE: MSMg01no101_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:00 2005CHROMAT_FILE: MSMg01no101_l02.g1 PHD_FILE: MSMg01no101_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,107,847 - 91,108,089)(91,233,068 - 91,233,357)
sequence
CCAATCTGAATTTGCGGCGCTAAACGAATCCTAAAGTCCGAGCTGCNCGG
AATCAGGCCAGGTGGCTTCATTCGAGCCTTCCCTGGACTGTGGGTATCTG
CTGGGGGTTCTGGGACCTTTTGCTGCTCCCATTCTACAGTATATAGTGGG
TTGTCTTGCTTGGCAGAGCTGGGGCTTTTTTCTTTCCCCCGGTGCTAATG
GAGCCCTGTTGCTTGCCAGGAGAACAACAGTAAAATAAGTATGGTTCCTG
GCTCCTGTCCTTGAGCTGCGAGCAGTGTAGTCAAGGACAGACAAAATGAC
ATAGTTAGCCAACGCAGTGTTAGGTGCATATGNGCAGGGGTGTGTGTGTG
TGTGTGTGTGTTTGTCTCCCCCCCCTCCCCCCCAAAANAAAACACTCCTC
TTTTCATTTTGTTTACTCTTATATATAAATAATCAGTATCGCCGGTGGGG
CCTACACCACTCCTCTCTCGTCCCCTCTCCTTGTACCCTTAGCCATTCCT
TTATTCAGCTACCGGACCCCCCTGGATTTTCCTAGTGATCGCTACGTACT
ATCTTACTCTGTTTGCCTCTCCCCCTACTTATCATCAGAATCTACGACTA
CGCGTACCCTCCCCCTCTTCTCTGTCCCCTACCTCCACACCGTGTCACTC
TCCCCCTGCCGTGCACTCATCCTTTTTTTTTTTTTCTTTTACCTTCCAAC
TTCGCTACTCCCCTCTCCCCCCT
NCCCCCGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACATGGATGAGTGCTCTGC
TACATATACACCTAAATGCTAGAAAAGGGCACTAGATCCTTTATAGGTGG
CTGGAAGCCACCACATAGATGCTCTGGAACTCAGGACCCCTGCAAGTGCA
GCCAGTGCTCCTAACCGCTGAGCCATCTCTCCAGCCCTCAGAATTCTTTT
GTCATTTGTAGGTATACAAGACTTTCCCCAAAATGGAGATTTTTCTAAGT
TATATTCTACTGTGACACCAGCCACGTGGTTTGTTGAAGAGGTACGGACA
GATGAGCCAGTGAAACAATTGCTCTGAGCACAAGTGCATGTGTAAAGTGT
CCCTGGAAACAAAAAGGCATGAGAAAAGTTGCAGTTGAAGAACTTCTCAA
TAAGCCTAATGACAGTGTTTGGAAGTGACTCTTGCATAAGTCAAATGGTG
ATGGACAAAACATGGGTGGACCTGGCAGGTAAGCCTTAAGACAGCCTGCG
TGAGCTAAACAAGATGATCCTCTAGGCTACCATCGAGGGAGGAGAGGATC
CATACAGCTCCTGTCCCAATGAAAACTTGGGCTCAAGAATCTATATGGAT
ACTGATCCCAAAGATTATTGTCCTGTTTTCTGCAATCTTCTCCCTGCCCA
AGCCAAAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_l02.b1 MSMg01no101_l02.b1 CHROMAT_FILE:
MSMg01no101_l02.b1 PHD_FILE: MSMg01no101_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:00 2005
         (243 letters)



>mm_chr8_91107647_91108289
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccttccctggactgtgggtatctgctgggggttctgggaccttttgctgctcccattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 gccttccctggactgtgggtatctgctgggggttctgggaccttttggtgctcccattct 260

                                                                       
Query: 61  acagtatatagtgggttgtcttgcttggcagagctggggcttttttctttcccccggtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagtatatagtgggttgtcttgcttggcagagctggggcttttttctttcccccggtgc 320

                                                                       
Query: 121 taatggagccctgttgcttgccaggagaacaacagtaaaataagtatggttcctggctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatggagccctgttgcttgccaggagaacaacagtaaaataagtatggttcctggctcc 380

                                                                       
Query: 181 tgtccttgagctgcgagcagtgtagtcaaggacagacaaaatgacatagttagccaacgc 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcccttgagctgcgagcagtgtagtcaaggacagacaaaatgacatagttagccaacgc 440

              
Query: 241 agt 243
           |||
Sbjct: 441 agt 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no101_l02.g1 MSMg01no101_l02.g1 CHROMAT_FILE:
MSMg01no101_l02.g1 PHD_FILE: MSMg01no101_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:00 2005
         (292 letters)



>mm_chr8_91232709_91233400
          Length = 692

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacatggatgagtgctctgctacatatacacctaaatgctagaaaagggcactagatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tttacatggatgagtgctctgctacatatacacctaaatgctagaaaagggcactagatc 590

                                                                       
Query: 61  ctttataggtggctggaagccaccacatagatgctctggaactcaggacccctgcaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ctttataggtggctggaagccaccacatagatgctctggaactcaggacccctgcaagtg 530

                                                                       
Query: 121 cagccagtgctcctaaccgctgagccatctctccagccctcagaattcttttgtcatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 cagccagtgctcctaaccgctgagccatctctccagccctcagaattcttttgtcatttg 470

                                                                       
Query: 181 taggtatacaagactttccccaaaatggagatttttctaagttatattctactgtgacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 taggtatacaagactttccccaaaatggagatttttctaagttatattctactgtgacac 410

                                                             
Query: 241 cagccacgtggtttgttgaagaggtacggacagatgagccagtgaaacaa 290
           ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cagccacgtgggttgttgaagaggtacggacagatgagccagtgaaacaa 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)