BAC Information

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BAC

Clone NameMSMg01-101L22
Chromosome8 (Build37)
Map Location 40,875,403 - 41,071,690
singlet/doubletdoublet
Overlap geneLOC666959
Upstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304, Msr1, EG621431, LOC100039072
Downstream geneEG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101L22.T7 (MSMg01no101_l22.b1)MSMg01-101L22.TJ (MSMg01no101_l22.g1)
ACCAG317078AG317079
length726722
length of high quality
(start - end)		651 (71 - 721)244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no101_l22.b1 PHD_FILE: MSMg01no101_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:04 2005CHROMAT_FILE: MSMg01no101_l22.g1 PHD_FILE: MSMg01no101_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,875,403 - 40,876,053)(41,071,447 - 41,071,690)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAATGCGCGGA
ATTCATTTAGAGATTCCTAAGCACTTATAAATATATACTTATATATGTTT
ATTTAGAGGGAAGTGTACTTAACTATAGAAAATTTTATTAACCAGCAACA
AAATATGGGTATTTTATTTTATGCTTTAAATGTATGATTTTCTAAAGAAC
AGATATACTGTGAAGAGCAGTCTCCTGCCTCAGCAGGCTTGTGTTGCCTA
GATTCTTATTGCATTGGAAGGATTTAGCTGGAATTGTTTTTCCTAATGTT
GCAATGGCTGCAAAATGGTTTTTAACATTTTTTTTTGCCAAGGAGAAAAC
AAATTTGTCACAAAAGATGATATAATGTAGTATGATTGATTCAAATTTAC
ATAATTATACAAGTAATTCTTCGCATATTGTAAACTATTTTTTAATCATG
TGTAACTCTGGAATTAAGCTTTCAAATATGATGCTTCTTTTGCAATCCTT
GCATATGATTAGGAGTCCCAGAGTTACCTCAAAGTACCAAAACCTGACTC
TATATTTAATTATTCATACCTCAGCTGTAATGTCCTATAAGTTTTTGTTG
ATATTTTAACCACATACTTTGTGTTCACAAACAATATTACATTATGAATA
ACAATTGTTGAGATTTTTTTTACAAGTTCATCACATGTAAAATACATTAA
ACAAGAGCATAGAGAACCTGCCAAGG

TCAATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCCATAATCCAGGATCCATAGTTTAATATTCAGTAGT
TTTAGAAAATGCATGGCCATTATCCCCTCTGATATTCCATTGGCCATACA
TTTACTTTTGCTACCGAGGTACCTGGTGCAGATTGTTGCTCTACATATCT
CCTGTGCTTTCTCCAGCATGTGATTGTTAGTGTTGCCTCTTCTCAGGTTC
TAATTTTCTGAGAATTTTGTTAAAGAAAAATTTTTTACTTTTAATGTTTT
ATTTTTAAATGCACCTTAGTTACTGTTTTTCCAATTTTAAAATTCCAAAC
TATATAAATAAATCATATAGTACCCCATACCCCATACTATATAAATGTGA
TAGACGATATGCATCATGAAGATATTTATTATTTATTTAACTTAGAATTG
TAAAAGTTGTATTCAACCATGCACATTCACATTTACTATGATGATACGAA
TAATATTTTTCAAAACTGAAACTTACAAGAGGCACGCTTACTGAAGGTAC
TAATTGCTCAGCTAAATGTCCCACATATAAGGTAGGACGTGGAACATATC
ACTATCACTCTGATTTCGCTTGCACTTCTCACACTGGCATGAAGGATATT
TCTGAGCCGTTTTATTTTTTTCCAATAAAACTGCCAGAAGCAATTTCTTA
TTGGATGAAAGGGTTCTGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_l22.b1 MSMg01no101_l22.b1 CHROMAT_FILE:
MSMg01no101_l22.b1 PHD_FILE: MSMg01no101_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:04 2005
         (651 letters)



>mm_chr8_40875203_40876253
          Length = 1051

 Score = 1251 bits (647), Expect = 0.0
 Identities = 650/651 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcacttataaatatatacttatatatgtttatttagagggaagtgtacttaactatagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcacttataaatatatacttatatatgtttatttagagggaagtgtacttaactatagaa 260

                                                                       
Query: 61  aattttattaaccagcaacaaaatatgggtattttattttatgctttaaatgtatgattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattttattaaccagcaacaaaatatgggtattttattttatgctttaaatgtatgattt 320

                                                                       
Query: 121 tctaaagaacagatatactgtgaagagcagtctcctgcctcagcaggcttgtgttgccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaaagaacagatatactgtgaagagcagtctcctgcctcagcaggcttgtgttgccta 380

                                                                       
Query: 181 gattcttattgcattggaaggatttagctggaattgtttttcctaatgttgcaatggctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattcttattgcattggaaggatttagctggaattgtttttcctaatgttgcaatggctg 440

                                                                       
Query: 241 caaaatggtttttaacatttttttttgccaaggagaaaacaaatttgtcacaaaagatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaatggtttttaacatttttttttgccaaggagaaaacaaatttgtcacaaaagatga 500

                                                                       
Query: 301 tataatgtagtatgattgattcaaatttacataattatacaagtaattcttcgcatattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tataatgtagtatgattgattcaaatttacataattatacaagtaattcttcgcatattg 560

                                                                       
Query: 361 taaactattttttaatcatgtgtaactctggaattaagctttcaaatatgatgcttcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaactattttttaatcatgtgtaactctggaattaagctttcaaatatgatgcttcttt 620

                                                                       
Query: 421 tgcaatccttgcatatgattaggagtcccagagttacctcaaagtaccaaaacctgactc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcaatccttgcatatgattaggagtcccagagttacctcaaagtaccaaaacctgactc 680

                                                                       
Query: 481 tatatttaattattcatacctcagctgtaatgtcctataagtttttgttgatattttaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatatttaattattcatacctcagctgtaatgtcctataagtttttgttgatattttaac 740

                                                                       
Query: 541 cacatactttgtgttcacaaacaatattacattatgaataacaattgttgagattttttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacatactttgtgttcacaaacaatattacattatgaataacaattgttgagattttttt 800

                                                              
Query: 601 tacaagttcatcacatgtaaaatacattaaacaagagcatagagaacctgc 651
           || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taaaagttcatcacatgtaaaatacattaaacaagagcatagagaacctgc 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no101_l22.g1 MSMg01no101_l22.g1 CHROMAT_FILE:
MSMg01no101_l22.g1 PHD_FILE: MSMg01no101_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:04 2005
         (244 letters)



>mm_chr8_41071290_41071933
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatccatagtttaatattcagtagttttagaaaatgcatggccattatcccctctgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ggatccatagtttaatattcagtagttttagaaaatgcatggccattatcccctctgata 342

                                                                       
Query: 61  ttccattggccatacatttacttttgctaccgaggtacctggtgcagattgttgctctac 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 341 ttccattggccatacatttacttttgctactgaggtacctggtgcagattgttgctctac 282

                                                                       
Query: 121 atatctcctgtgctttctccagcatgtgattgttagtgttgcctcttctcaggttctaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 atatctcctgtgctttctccagcatgtgattgttagtgttgcctcttctcaggttctaat 222

                                                                       
Query: 181 tttctgagaattttgttaaagaaaaattttttacttttaatgttttatttttaaatgcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tttctgagaattttgttaaagaaaaattttttacttttaatgttttatttttaaatgcac 162

               
Query: 241 ctta 244
           ||||
Sbjct: 161 ctta 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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