Query= MSMg01no102_j05.b1 MSMg01no102_j05.b1 CHROMAT_FILE:
MSMg01no102_j05.b1 PHD_FILE: MSMg01no102_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:12 2005
(445 letters)
>mm_chr8_121289267_121290112
Length = 846
Score = 625 bits (323), Expect = 0.0
Identities = 357/373 (95%), Gaps = 9/373 (2%)
Strand = Plus / Minus
Query: 73 aacccctacccactccccaaggttcatatagccattgttcaccaccagcatgagagcaaa 132
||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 aacccctactcactcctcagggttcatatagccattgttcaccaccagcatgagagcaaa 787
Query: 133 ctctttcactgaatcctgtttaaaagaattataacactgaaatcctcagagaacaacccc 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ctctttcactgaatcctgtttaaaagaattataacactgaaatcctcagagaacaa---- 731
Query: 193 cgccccccatccactcttaccctttccctcacatacacacactcagtcgcctggacactc 252
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 730 ----ccccatccactcttaccccttccctcacatacacacactcagtcgcctgtacactc 675
Query: 253 tgagagagggagcagaccatgtaaccacatatatccatgctgcctatctcttacccatga 312
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgagagagggagcagaccatggaaccacatatatccatgctgcctatctcttacccatga 615
Query: 313 ttcatcatgcttcttcaagagtctgctaacagagttactacctgatgtcacctctggatc 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ttcatcatgcttcttcaagagtctgctaacagagttactacctgatgtcacctctggatc 555
Query: 373 cttccacacctattaccgtgagttacata-gcctcttttctttataaagcagcctgaatc 431
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 554 cttccacacctattaccatgagttacataagcctcttttctttataaagcagcctgaatc 495
Query: 432 tgctattccatta 444
|||||||||||||
Sbjct: 494 tgctattccatta 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 846
Length adjustment: 10
Effective length of query: 435
Effective length of database: 836
Effective search space: 363660
Effective search space used: 363660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no102_j05.g1 MSMg01no102_j05.g1 CHROMAT_FILE:
MSMg01no102_j05.g1 PHD_FILE: MSMg01no102_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:12 2005
(448 letters)
>mm_chr8_121151513_121152360
Length = 848
Score = 806 bits (417), Expect = 0.0
Identities = 445/463 (96%), Gaps = 16/463 (3%)
Strand = Plus / Plus
Query: 1 agcggaaaagcatggggacactgcttacagccttgctcagtacttcataacatagctagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 agcggaaaagcatggggacactgcttacagccttgctcagtacttcataacatagctagc 246
Query: 61 ttttttttttt--------------aagcccaggtcccttggctctggaaatggtaccac 106
||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 247 tttttttttttttttttttttttttaagcccaggtcccttggctctggaaatggtaccac 306
Query: 107 ccacagttggctgggccctcctgcattagtcagcagtggagacagtctccccatacacat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccacagttggctgggccctcctgcattagtcagcagtggagacagtctccccatacacat 366
Query: 167 aaccatgggtcaatctgatctgaggaatcccttagttaaaactccctcctcagataacgc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaccatgggtcaatctgatctgaggaatcccttagttaaaactccctcctcagataacgc 426
Query: 227 taagctgtatcatgttacaattaggatatgatccgagactgctcaggcgttgagatcaca 286
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 taagctgtatcaagttacaattaggatatgatccgagactgctcaggcgttgagatcaca 486
Query: 287 gcta-aggggtgcacaggtataaatgctacaccagttggaagactgggttggagtctcct 345
|||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 487 gctacaggg-tgcacaggtataaatgctacaccagttggaagactgggttggtgtctcct 545
Query: 346 ctccagtccctgaaagcccacattgctgactctcttgattctttaccgagccaacacttc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ctccagtccctgaaagcccacattgctgactctcttgattctttaccgagccaacacttc 605
Query: 406 aggctgtatagggatagacctggctgggtaagtgacttcactc 448
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aggctgtatagggatagacctggctgggtaagtgacttcactc 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
