BAC Information

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BAC

Clone NameMSMg01-103G24
Chromosome8 (Build37)
Map Location 66,242,195 - 66,349,989
singlet/doubletdoublet
Overlap geneLOC384831
Upstream geneSpock3
Downstream geneEG244495, Tll1, LOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103G24.T7 (MSMg01no103_g24.b1)MSMg01-103G24.TJ (MSMg01no103_g24.g1)
ACCAG318305AG318306
length734728
length of high quality
(start - end)		249 (74 - 322)632 (75 - 706)
definitionCHROMAT_FILE: MSMg01no103_g24.b1 PHD_FILE: MSMg01no103_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:22 2005CHROMAT_FILE: MSMg01no103_g24.g1 PHD_FILE: MSMg01no103_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,349,741 - 66,349,989)(66,242,195 - 66,242,826)
sequence
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGTAGGTACGCGCGGA
ATTCCTTGCCACTTACTGATATGTCTTTTATTTGTGCAAAAAGTGGGTTA
AATATGGTGATCTTACATGCTTGAATGACCCAATATTTTGGGTTGAGAAA
ATCAATGTGCAAAAGCAGTAGTGTAAAGATGCCTTGCACAGAAGTGTGGG
CTCTGAGCCAGTCAAAGATTTGAGTGGTAATATTTTTATAAGGTAGTTGA
CCTTGGGTCTGTTATTACTTTAACTCTCTGTGGTTTACTTCATTCTGAAA
AATAGAGATGGTAGTAAGTGCAGTTCATCCGTTTTACTTTAATTTTCTTT
TAATATAAATAGGTATTTTTATGATCCAACCGAGTTCCACAGGTAAAACA
ATTAAATGCCAACATAGGAGAAACATTCACACGCAGTAGCTATGAGTGTC
AAAAGTTTTTCCTCGAGTTTAGTTAATTAATGGCAATTTTATAGAGGAAT
ACAAGTAAACACGTCATGCAATTGCGTCAGAGGACAGCTGCCCACAGAAA
TATATCATGCTCTATATACTTCAGAAAAATGCAAACATTTCTTAATCGAG
TTTGTCAGTGCTTTTTAAACTATAGTACATCTATGACAATGACTGCCATG
AAATCTATAATCTGTTCCTGTTCTTGATAAAACATTATTTTACACGGACC
TTACGGCCTTGATTGCCCATATGCTCCTTTATTC

NCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAAGATTTGTGTCCACAGCAAAACA
GACACTATCATTAACTTTTTAACAAATATTGTACAAAATGTTTTCCCTAT
CCATTGCTCTTTATTATGAAGTACAGTATATAAACAAATATCTGCAAAAA
TTAAAATATAATAAGTTATATCCAATAATTCATTTTACATTCAGCAGTTT
AACCAAACTATTATGTTTTACTATTAAATGATAAAATATAATTACTTTAG
TATTAGTACTTTAATATTTGTAGCTATTTGAAATACATATATTTAATATA
TTTTCTAATTATTATTAATAATTTTATTTATTCTATATTTTAAATCTTAA
TATAGTTAAAGTGCAACTATGCAAACATATATATACATATATATTACATA
TATATATTGCATATATTTGTTTGTGACTACTATGATTTCCATCTTGCTAA
TAAATTGTATTTAATTTTCTATCAGATATCTTTCACTATATATACACATA
TATTTGTATTGTAAGCATGCTATAAAAAGGGTAAGTATCCATGACTATGA
TATATTTCAGTAATAAGGCAAGTAGATATAAAATTTCGACATCAAAATGA
TATACTATTTATTGTGGTGAAATAGCATAAGAAATGTCCACTTCAAACAA
AAATTATTATGAGAACCACCAAATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_g24.b1 MSMg01no103_g24.b1 CHROMAT_FILE:
MSMg01no103_g24.b1 PHD_FILE: MSMg01no103_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:22 2005
         (249 letters)



>mm_chr8_66349616_66350264
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttttatttgtgcaaaaagtgggttaaatatggtgatcttacatgcttgaatgacccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcttttatttgtgcaaaaagtgggttaaatatggtgatcttacatgcttgaatgacccaa 315

                                                                       
Query: 61  tattttgggttgagaaaatcaatgtgcaaaagcagtagtgtaaagatgccttgcacagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tattttgggttgagaaaatcaatgtgcaaaagcagtagtgtaaagatgccttgcacagaa 255

                                                                       
Query: 121 gtgtgggctctgagccagtcaaagatttgagtggtaatatttttataaggtagttgacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtgtgggctctgagccagtcaaagatttgagtggtaatatttttataaggtagttgacct 195

                                                                       
Query: 181 tgggtctgttattactttaactctctgtggtttacttcattctgaaaaatagagatggta 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 194 tgggtctgttattactttaactgtctgtggtttacttcattctgaaaaatagagatggta 135

                    
Query: 241 gtaagtgca 249
           |||||||||
Sbjct: 134 gtaagtgca 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no103_g24.g1 MSMg01no103_g24.g1 CHROMAT_FILE:
MSMg01no103_g24.g1 PHD_FILE: MSMg01no103_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:22 2005
         (632 letters)



>mm_chr8_66241995_66243026
          Length = 1032

 Score = 1191 bits (616), Expect = 0.0
 Identities = 628/632 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagatttgtgtccacagcaaaacagacactatcattaactttttaacaaatattgtac 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 aaaagatttgtgtccacagcaaaacagacactgtcattaactttttaacaaatattgtac 260

                                                                       
Query: 61  aaaatgttttccctatccattgctctttattatgaagtacagtatataaacaaatatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aaaatgttttccctatccattgctctttattatgaagtacagtatataaacaaatgtctg 320

                                                                       
Query: 121 caaaaattaaaatataataagttatatccaataattcattttacattcagcagtttaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaaattaaaatataataagttatatccaataattcattttacattcagcagtttaacc 380

                                                                       
Query: 181 aaactattatgttttactattaaatgataaaatataattactttagtattagtactttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactattatgttttactattaaatgataaaatataattactttagtattagtactttaa 440

                                                                       
Query: 241 tatttgtagctatttgaaatacatatatttaatatattttctaattattattaataattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tatttgtagctatttgaaatacatatatttaatatattttctaattattattaatcattt 500

                                                                       
Query: 301 tatttattctatattttaaatcttaatatagttaaagtgcaactatgcaaacatatatat 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 tatttattctatattttaaatcttaatatagttaaagtgcaattatgcaaacatatatat 560

                                                                       
Query: 361 acatatatattacatatatatattgcatatatttgtttgtgactactatgatttccatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatatatattacatatatatattgcatatatttgtttgtgactactatgatttccatct 620

                                                                       
Query: 421 tgctaataaattgtatttaattttctatcagatatctttcactatatatacacatatatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctaataaattgtatttaattttctatcagatatctttcactatatatacacatatatt 680

                                                                       
Query: 481 tgtattgtaagcatgctataaaaagggtaagtatccatgactatgatatatttcagtaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtattgtaagcatgctataaaaagggtaagtatccatgactatgatatatttcagtaat 740

                                                                       
Query: 541 aaggcaagtagatataaaatttcgacatcaaaatgatatactatttattgtggtgaaata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaggcaagtagatataaaatttcgacatcaaaatgatatactatttattgtggtgaaata 800

                                           
Query: 601 gcataagaaatgtccacttcaaacaaaaatta 632
           ||||||||||||||||||||||||||||||||
Sbjct: 801 gcataagaaatgtccacttcaaacaaaaatta 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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