TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGGCAATCTCCTCACTACTGAGCTCTGTGTACTGTCACTATTATCT
TTTTTGAGAATCATTTCAAATCCAAACAAATATAAAATTTTAAAGGAAAA
TGGGTAATTTAGATGTATAGGTATTAAACATATTTTATTGTATAGATACT
TAAGGCAAGAGCAAAGTTATAAATTTATTCCTAGAAAATTTAGAGGAGAG
GTTTTAAATATTTGTTGGAGACTTTAGATGTTGACAGAAAAAAAATTTGC
TAAAAATGTTTAGTCTACAGTATATTTAGGCTCATTATTGAAAAAATGAG
ATTATAATTGATCACAATACACTATTATGTATCAAATTATAATTTTTATG
ATGAAGAAAGAGGATATATATATGTATATATATATTTACATATATACACA
CGCACACATATATATACACACATATATATTTCATACATGAATGGGAACAT
GTGGTAATGATTTCTATTTTTAATTTTTGATTTGACTAGCATGATGATTG
TGATAAACTGTCTCTTAGTAAATTTGCACAGGTTTTCAATCCTTGCTACT
TTAGATGCTGAGGCAGGAGGTTTGCAAGTTCAAATCTTTCCTGGACTGAG
AATGAGTTCAAGGCCATACTGACCACAATTTAAGAAGGAAAGGCTGCTAT
TAAGCTCAGTGATT

NACACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCATAATCAGCTTCCAAACG
CTGACACCATTGCATACACCAGCAAGATTTTGCTGAAAGGACCCAGATAT
AGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGAT
GCTCATAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTA
GAGAAAGTACCCAAGGAGCTGGGGGGGGGATCTGCAACCTTATAGGTGGA
ACAACAATATGAACTAACCAGTACCCCGGAGCTCATGTATCTAGCTGCAT
ATGTATCAGAAGATGGTATCAGTGGAAAGAGAGGCCCATTGGTCGTGCAA
ACTTTATATGCCTCAGTACAGGGGAACGTCAGGGTTAATAAGTGGGAGTG
GGTTGGGGAGCATGTGGGGTAATTTTGCGAAAGATTCCATTCCCCCCTTT
TTCTCTTTCTCTTTTTCCCCCTCCCCCTCCCTTTTTCTCTTCACATCTCC
TTACTTACCTTTTTTCCCCTCCCCTTTTCCTTTTTGCCTCCTCTCTGTTT
TTTATTTGTTTCATCCTATCCCTCCAATAACCTACCCCCACCCCCAACCC
CGACACCTCTTATTCCCCCCCTTTCCTTTTTTTTTTACCCTTTCCCCTAC
TTATTTCACCTCCCACCCTTTTCTCATCATTTATCACT

Query= MSMg01no103_o24.b1 MSMg01no103_o24.b1 CHROMAT_FILE:
MSMg01no103_o24.b1 PHD_FILE: MSMg01no103_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:00 2005
         (668 letters)



>mm_chr8_66567143_66568210
          Length = 1068

 Score = 1079 bits (558), Expect = 0.0
 Identities = 567/570 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctggcaatctcctcactactgagctctgtgtactgtcactattatcttttttga 64
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gaattcctggcaagctcttcactactgagctctgtgtactgtcactattatcttttttga 511

                                                                       
Query: 65  gaatcatttcaaatccaaacaaatataaaattttaaaggaaaatgggtaatttagatgta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaatcatttcaaatccaaacaaatataaaattttaaaggaaaatgggtaatttagatgta 451

                                                                       
Query: 125 taggtattaaacatattttattgtatagatacttaaggcaagagcaaagttataaattta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 taggtattaaacatattttattgtatagatacttaaggcaagagcaaagttataaattta 391

                                                                       
Query: 185 ttcctagaaaatttagaggagaggttttaaatatttgttggagactttagatgttgacag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttcctagaaaatttagaggagaggttttaaatatttgttggagactttagatgttgacag 331

                                                                       
Query: 245 aaaaaaaatttgctaaaaatgtttagtctacagtatatttaggctcattattgaaaaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaaaaaaatttgctaaaaatgtttagtctacagtatatttaggctcattattgaaaaaat 271

                                                                       
Query: 305 gagattataattgatcacaatacactattatgtatcaaattataatttttatgatgaaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gagattataattgatcacaatacactattatgtatcaaattataatttttatgatgaaga 211

                                                                       
Query: 365 aagaggatatatatatgtatatatatatttacatatatacacacgcacacatatatatac 424
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 210 aagaggatatatatatgtatatatatatttatatatatacacacgcacacatatatatac 151

                                                                       
Query: 425 acacatatatatttcatacatgaatgggaacatgtggtaatgatttctatttttaatttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 acacatatatatttcatacatgaatgggaacatgtggtaatgatttctatttttaatttt 91

                                                                       
Query: 485 tgatttgactagcatgatgattgtgataaactgtctcttagtaaatttgcacaggttttc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  tgatttgactagcatgatgattgtgataaactgtctcttagtaaatttgcacaggttttc 31

                                         
Query: 545 aatccttgctactttagatgctgaggcagg 574
           ||||||||||||||||||||||||||||||
Sbjct: 30  aatccttgctactttagatgctgaggcagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)