BAC Information

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BAC

Clone NameMSMg01-105B07
Chromosome8 (Build37)
Map Location 89,413,176 - 89,413,587
singlet/doubletsinglet
Overlap geneBC004022
Upstream genePhkb, LOC671665, LOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178
Downstream geneLOC666960, EG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik, Zfp423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105B07.T7 (MSMg01no105_b07.b1)MSMg01-105B07.TJ (MSMg01no105_b07.g1)
ACCAG319530AG319531
length704700
length of high quality
(start - end)
398 (87 - 484)414 (77 - 490)
definitionCHROMAT_FILE: MSMg01no105_b07.b1 PHD_FILE: MSMg01no105_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:35 2005CHROMAT_FILE: MSMg01no105_b07.g1 PHD_FILE: MSMg01no105_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCGGCNNGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTTTGTTTTCCTCTGAGCCCCATTTTTTAATGG
GGTTATTCGATTTTCTGGAGCCCACCTTCTTGAGTTCTTTATATATATTG
GATATTAGTCCCCTATCCAATTTGGGATAGGTAAAGATCCTTTCCCAATC
TGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGC
TTTGCAATTTTATGAGGTCCCATTTATCGATTCTCGATCTTACAGCACAA
GCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCAAATCTTCGAG
GCTTTTCCTTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGT
GAAGTTCCTGGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAAT
GGATCGATTCGAATTCTTCTACATGATAACGACCGGTGGTGCCAGCACCA
TTTGTTGAAAATGCTGTCTTTTTTCCACTGCATGGCTTTTGCTCCCTTGT
CAAAGATCAAGTGATCATAGGTTTGTGGGTTCATTTCTGGGACTTCAATT
CTATTCCATTGGCCTACTTGTCTGTCACTATACCAGTACCATTGCAGTTT
TTATCACTATTGCTCTGTCGCCTCCCTTTTCCTTTCCGACTTTGCTACCT
AGGA
NNTAACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTTCCAGCAACCACGTGGTGGC
TCACAACCGTCTGTAATGGGATCTTGATGCCCTCTTCTGTGTCTGAAGAC
AGCTACAGTGTACTCATCTAAATAAAAGATAAATATCATAAGCAATGCTG
TAGAGGCTGGAGAGACGGCTCAGACAGTAACAGCACTGGCTCTTGAAGAG
GACCCGGTTTGATTCCCAGTTATCCACATGCCCTGCTCATGTGTATGATT
TGAGTTCCAGGGGATCTGATGCCTTCCTTGGGGGCCACACCTGGTGCACA
TACATACATTCAGGCAAAGCACCCATACACATAAAAGTAGCTAAGTTAAA
ACTTTATCTTAAATTATGTTATATGTGCATGTGAGGGTAGGTAATCTTGG
AGGTAATCAGAGATGCTAGATCCCCTGGAGCTGGATTACCGCCAGCTAGC
AACTTTTGAACATGCATGCTGGGAACCAAACTTGTATCCCAAACAGTACA
CACTCCAAACTATCTAGAACTGCTGCTGCTGCTGCTGTTGTTAGTGTGGA
TTAACCGTAGACAGGGACTCAACCCACGCTCTCACCTTATCAGGTAAGTA
CTTTACTCCTGAGCTTCATCTCTGGTTTCTGCCCACTTGCTTTTAATTTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_b07.g1 MSMg01no105_b07.g1 CHROMAT_FILE:
MSMg01no105_b07.g1 PHD_FILE: MSMg01no105_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:35 2005
         (414 letters)



>mm_chr8_89412976_89413788
          Length = 813

 Score =  760 bits (393), Expect = 0.0
 Identities = 408/413 (98%), Gaps = 1/413 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttccagcaaccacgtggtggctcacaaccgtctgtaatgggatcttgatgccctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttccagcaaccacgtggtggctcacaaccgtctgtaatgggatcttgatgccctctt 260

                                                                       
Query: 61  ctgtgtctgaagacagctacagtgtactcatctaaataaaagataaatatcataagcaat 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 261 ctgtgtctgaagacagctacagtgtactcatataaataaaagataaatatcataaacaat 320

                                                                       
Query: 121 gctgtagaggctggagagacggctcagacagtaacagcactggctcttgaagaggacccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgtagaggctggagagacggctcagacagtaacagcactggctcttgaagaggacccg 380

                                                                       
Query: 181 gtttgattcccagttatccacatgccctgctcatgtgtatgatttgagttccaggggatc 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 gtttgattcccagttatccacatgccctgctcatgtgtatgctttgagttccaggggatc 440

                                                                       
Query: 241 tgatgccttccttgggggccacacctggtgcacatacatacattcaggcaaagcacccat 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatgccttccttggggaccacacctggtgcacatacatacattcaggcaaagcacccat 500

                                                                       
Query: 301 acacataaaagtagctaagttaaaactttatcttaaattatgttatatgtgcatgtgagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacataaaagtagctaagttaaaactttatcttaaattatgttatatgtgcatgtgagg 560

                                                                
Query: 361 gtaggtaatcttggaggtaatcagagatgctagatcccctggagctggattac 413
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 gtaggtaatcttggaggtaatcagagatgctagatcccctg-agctggattac 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 813
Length adjustment: 9
Effective length of query: 405
Effective length of database: 804
Effective search space:   325620
Effective search space used:   325620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)