BAC Information

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BAC

Clone NameMSMg01-105C08
Chromosome8 (Build37)
Map Location 61,050,585 - 61,050,723
singlet/doubletsinglet
Overlap gene4930431L04Rik
Upstream geneGalnt7, LOC100040711
Downstream geneBC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105C08.T7 (MSMg01no105_c08.b1)MSMg01-105C08.TJ (MSMg01no105_c08.g1)
ACCAG319578AG319579
length705623
length of high quality
(start - end)
464 (43 - 506)139 (77 - 215)
definitionCHROMAT_FILE: MSMg01no105_c08.b1 PHD_FILE: MSMg01no105_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:40 2005CHROMAT_FILE: MSMg01no105_c08.g1 PHD_FILE: MSMg01no105_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCCTATACTGCCGCATAGAACCTTCACAGGACGAAGGGCCTCTCCTCC
CATTGATGACCGACTAGGCCACCTTCTGCTACTATATAGCTAGAGCCATT
AGTTCCATGATGTGTTTTCTTTGATTGGTGGTATAGTTCCAAGGGGCTCT
GAGGGTACTGATTAGTTCATATTGATGTTCCTCCTATGGGGCTTCAGACC
CCTTCAGCTCCCTGGCTCTCTGGCTCCTTCATTGGGGACCTGTGCTCCAC
CCAATGGTTGACTGTGAGCATTCACTTCTGTATTTGTCAGGCACTGGCAG
AGCCTCACAGGAGACAGCTATATCAGGCTCCTGTCAGCAGTCTCTTGTTG
GCAACTGTCTAGTGTCTGGGTTTGGTGGTTGTTTATGGGATGGATCCCCA
AGTCGGGCAATCTCTGGACTCTACTCTGAACTTTGTCTCTGCAACTCCTT
CCTTGTGTATTTTGTTCCCCATTCTAAGAAGGAATGAAGTATCCATACTT
TCTGTCTGTCTTCTTCTTGAGGTTCATGTGTTTATAAAGCAAGTTTCTAC
ACTAATCATTTTGTGTGCTTAGGGAAAGTATATGTGGTACTGGGAACAGA
GAACCTTAACTAAAAATGTTTTCTTAAAAGCCCATTGTAAACCTTTTTAT
AAATT
CCTTATGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCCTGTGAGGATCTTTTGACACA
ATTCACATTCATTTCAAAAAGCTTAAGTGTGCTCTGGCCACAGGTTTATT
CTGAGAAGGGCCATAGGGCATTGCATACAAGTGTGCAGTATGGAACACAA
GAATCCATGTTATTTTCAAACGCCTCAGGAAATTGGTACTTGAAAAGTAA
AAATATATTCCCCCTTCAGTTTTTTTAAAAAACCATTACTTTTGGAAAAA
AATTGGCCCCTTTTTTCTTCCAAAAGGGAAATAAACATTTGCCCCTTTTG
GAATTCTCCCGCATTCTTAGAGACATTTTTTTAAAAAACAACAAACTCCT
TGTTCTTTCCTTTTTCTTTCTCACCACACCCATCCTTCCGCTTTCATACA
CACCCCCCCTCTATTTATATCCTTTCCTCTTTCTCCTTTTTTTACTCTCT
CTCTTCCTTTTCCCTTACTTTTACCTATTTCTTCTTCCCCCTCCCTTTTT
TTTTTTCTTTTCCCTTTTCATCCCCCCCCCCCCCCTTCTTTCCACTTCCT
TCCTTCTTCCATTTCTCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_c08.g1 MSMg01no105_c08.g1 CHROMAT_FILE:
MSMg01no105_c08.g1 PHD_FILE: MSMg01no105_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:41 2005
         (139 letters)



>mm_chr8_61050385_61050923
          Length = 539

 Score =  269 bits (139), Expect = 5e-77
 Identities = 139/139 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcctgtgaggatcttttgacacaattcacattcatttcaaaaagcttaagtgtgctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgcctgtgaggatcttttgacacaattcacattcatttcaaaaagcttaagtgtgctctg 280

                                                                       
Query: 61  gccacaggtttattctgagaagggccatagggcattgcatacaagtgtgcagtatggaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gccacaggtttattctgagaagggccatagggcattgcatacaagtgtgcagtatggaac 220

                              
Query: 121 acaagaatccatgttattt 139
           |||||||||||||||||||
Sbjct: 219 acaagaatccatgttattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)